Browse Element(s) Details


OsAffx.24307.2.S1_at

Description tigr:9630.m01747
TID=OsAffx.24307.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g184904/11hypothetical protein
LOC_Os03g503643/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein
LOC_Os02g18500OsAffx.12101.1.S1_at10/112+10772433..10773887Chlorophyllase-2, chloroplast precursor, putative
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24307.2.S1_at--742--8311NONE
GGCTCCCCGGCGTGATAGCAACGGA
NONE
OsAffx.24307.2.S1_at--63--4791NONE
GCTCCCCGGCGTGATAGCAACGGAG
NONE
OsAffx.24307.2.S1_at--48--3811NONE
CTCCCCGGCGTGATAGCAACGGAGG
NONE
OsAffx.24307.2.S1_at--41--9311NONE
TCCCCGGCGTGATAGCAACGGAGGA
NONE
OsAffx.24307.2.S1_at--292--4211NONE
CCCCGGCGTGATAGCAACGGAGGAC
NONE
OsAffx.24307.2.S1_at--669--4191NONE
CCCGGCGTGATAGCAACGGAGGACA
NONE
OsAffx.24307.2.S1_at--917--3931NONE
CGGCGTGATAGCAACGGAGGACAGG
NONE
OsAffx.24307.2.S1_at--1112--10512Chr02:10766743..10767059 (25 bp)
TTCACTCGCCAGGATCCACAAGGAG
LOC_Os02g18490
OsAffx.24307.2.S1_at--282--9692Chr02:10766744..10767060 (25 bp)
TCACTCGCCAGGATCCACAAGGAGA
LOC_Os02g18490
OsAffx.24307.2.S1_at--344--3332Chr02:10766745..10767061 (25 bp)
CACTCGCCAGGATCCACAAGGAGAG
LOC_Os02g18490
OsAffx.24307.2.S1_at--724--1071Chr02:10767302..10767326 (25 bp)
AGCGGCGACGGTGCCCGGTTGAAGA
LOC_Os02g18490
Target Sequence 
GGCTCCCCGGCGTGATAGCAACGGAGGACAGGGAGAGGAGGAGATGGTGAGCCAGGGGAGCGCGGGAGGGGGAGTGGCGG
CCTCCTCCGGGGTCGTCGTCAACATCACCACCGGGCCCATGACGGAGACGGAGGACGACATGGCCGTCGGCGAGGAGGAG
GAGGTGGTGGCGGCGTCGGCGGAGACGGAGGAGCACGTGCAGCGAATCCTCCTCGCCATCGACGCCTTCACTCGCCAGGA
TCCACAAGGAGAGGAGAGGGTGGAGAGGTGGGAGGACGAGATCCGGGAGCTGCGCGCCCATGACGCCGCCAATGAGCAGG
CACGCTCCCTCCGCCGCCACCGCTCTCGTCTGCCGACGTCGCACCGTTCCAGCCCGTCGACGCCGCACCGCTCTCGCCCG
CCGACGCCGCCTCTCCGCAACCGTGCTCGCCCGCCACCGTCGCCGCTTCGCCTGCTCTGGCCACCATTCTGGTGCGGCGA
CGGCTCCTTCCCCAGCGGCGACGGTGCCCGGTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24307.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis