Browse Element(s) Details


OsAffx.12101.1.S1_at

Description tigr:9630.m01748
TID=OsAffx.12101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to chlorophyllase 2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1850010/11Chlorophyllase-2, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein
LOC_Os02g18500OsAffx.12101.1.S1_at10/112+10772433..10773887Chlorophyllase-2, chloroplast precursor, putative
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein
LOC_Os02g18520Os.46715.1.S1_at3/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18520Os.46715.1.S1_x_at2/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0015996biological_processchlorophyll catabolism
GO:0009507cellular_componentchloroplast
GO:0047746molecular_functionchlorophyllase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12101.1.S1_at--424--2597Chr08:19170264..19170283 (20 bp)
AACGAACGCAGCCTTAGAGTACGCC
NONE
OsAffx.12101.1.S1_at--799--10011NONE
TAGAGTACGCCCGAGGCACGTCGGC
NONE
OsAffx.12101.1.S1_at--832--3971Chr02:10772716..10772740 (25 bp)
CGGGCGTGAACCATTGCGAGTTCTA
LOC_Os02g18500
OsAffx.12101.1.S1_at--1014--2631Chr02:10772708..10772732 (25 bp)
AACCATTGCGAGTTCTACGACGAGT
LOC_Os02g18500
OsAffx.12101.1.S1_at--304--6491Chr02:10772671..10772695 (25 bp)
GATACCACTTTGTGCTGCGGGACAA
LOC_Os02g18500
OsAffx.12101.1.S1_at--685--9111Chr02:10772659..10772683 (25 bp)
TGCTGCGGGACAACGGCCACCTGGA
LOC_Os02g18500
OsAffx.12101.1.S1_at--426--4411Chr02:10772558..10772582 (25 bp)
GCCAGGAGGACCATCGGTGGCCTCA
LOC_Os02g18500
OsAffx.12101.1.S1_at--119--8631Chr02:10772533..10772557 (25 bp)
TGGTGGCCTTCCTCAGGGACGCGCT
LOC_Os02g18500
OsAffx.12101.1.S1_at--191--8551Chr02:10772509..10772533 (25 bp)
TGGAGGACCAACACGACGACCTCAA
LOC_Os02g18500
OsAffx.12101.1.S1_at--746--3231Chr02:10772487..10772511 (25 bp)
CAAGCTCGTGCTCAAAGTTGGCGTT
LOC_Os02g18500
OsAffx.12101.1.S1_at--1123--7251Chr02:10772480..10772504 (25 bp)
GTGCTCAAAGTTGGCGTTAACCCGG
LOC_Os02g18500
Target Sequence 
AACGAACGCAGCCTTAGAGTACGCCCGAGGCACGTCGGCGGCCCGCCATGCGCGCCGGCGGGCGTGAACCATTGCGAGTT
CTACGACGAGTGCGCGCCGCCGCGATACCACTTTGTGCTGCGGGACAACGGCCACCTGGACATGCTGGACGACGGCGTGC
CGTACGCCATCAACAACTGCATGTGCATGAGGAACCTCGGGGACACCAAGGAGGTGGCCAGGAGGACCATCGGTGGCCTC
ATGGTGGCCTTCCTCAGGGACGCGCTGGAGGACCAACACGACGACCTCAAGCTCGTGCTCAAAGTTGGCGTTAACCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis