Browse Element(s) Details


OsAffx.2667.1.S1_at

Description tigr:9630.m01749
TID=OsAffx.2667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stripe rust resistance protein Yr10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1851011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein
LOC_Os02g18500OsAffx.12101.1.S1_at10/112+10772433..10773887Chlorophyllase-2, chloroplast precursor, putative
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein
LOC_Os02g18520Os.46715.1.S1_at3/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18520Os.46715.1.S1_x_at2/112+10792693..10797079retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18530OsAffx.12102.1.S1_at10/112+10800142..10802475hypothetical protein
LOC_Os02g18540OsAffx.24308.1.S1_s_at11/112+10803654..10812274Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2667.1.S1_at--457--8811Chr02:10777709..10777733 (25 bp)
TGATTGGATCAGCTGGCTCGTTCGC
LOC_Os02g18510
OsAffx.2667.1.S1_at--228--3011Chr02:10777624..10777648 (25 bp)
AATGCCGAGGCTCAGAACGCTTCGC
LOC_Os02g18510
OsAffx.2667.1.S1_at--597--531Chr02:10777519..10777543 (25 bp)
ATCGCTCCAGGAGGTCAATGTCTCG
LOC_Os02g18510
OsAffx.2667.1.S1_at--422--7171Chr02:10777500..10777524 (25 bp)
GTCTCGTTGGATTGTGAAGGCGCCA
LOC_Os02g18510
OsAffx.2667.1.S1_at--96--7351Chr02:10777464..10777488 (25 bp)
GTGAACGAATTGAAGGCTGCGCTGA
LOC_Os02g18510
OsAffx.2667.1.S1_at--289--3831Chr02:10777448..10777472 (25 bp)
CTGCGCTGAGGCGTGCCACCAAGAT
LOC_Os02g18510
OsAffx.2667.1.S1_at--539--1291Chr02:10777427..10777451 (25 bp)
AGATCCACCCGAATCATCCAAGCAT
LOC_Os02g18510
OsAffx.2667.1.S1_at--821--3531Chr02:10777413..10777437 (25 bp)
CATCCAAGCATTAGCATTGACGGAG
LOC_Os02g18510
OsAffx.2667.1.S1_at--507--10171Chr02:10776497..10776521 (25 bp)
TATCATACATGGCACATCGGCTGTG
LOC_Os02g18510
OsAffx.2667.1.S1_at--148--4671Chr02:10776433..10776457 (25 bp)
GCGTGGAGGCCAAACACGTCGACCA
LOC_Os02g18510
OsAffx.2667.1.S1_at--377--9271Chr02:10776316..10776340 (25 bp)
TCCTCCACGGCTGCAACATGGTGAA
LOC_Os02g18510
Target Sequence 
TGATTGGATCAGCTGGCTCGTTCGCGTGCCTGGTGTGCTGTGGGTTGTGGGGATTCGTTGGGCCGGCGGTGTTCCGGCGA
GGAGCAATGCCGAGGCTCAGAACGCTTCGCTCCCGGTTCTCCGTGCGGGAGGCGATCGCCGTCGCCGGTGCCGGCGACGA
TGGTCTCGACTTGGGACTGGGGAGCTTGCCATCGCTCCAGGAGGTCAATGTCTCGTTGGATTGTGAAGGCGCCAGCGAGG
AGGAGGTGAACGAATTGAAGGCTGCGCTGAGGCGTGCCACCAAGATCCACCCGAATCATCCAAGCATTAGCATTGACGGA
GAAAAAGAAGAAGAAGATACATACCTCATATCAATATATCATACATGGCACATCGGCTGTGCGCTCGGCATGGTGGCGGT
GTTCCATGCGGCGCCGCACCGCGTGGAGGCCAAACACGTCGACCACAGCGTGCTCCCGAGCGTGCCCAAGGCTTGGTGCC
CCAAGCCGCTCATGGTGGTGGCCCCCGCCAACGCCGGGACCTACCCGGTCGCCATCTTCCTCCACGGCTGCAACATGGTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis