Browse Element(s) Details


OsAffx.24306.1.S1_at

Description tigr:9630.m01745
TID=OsAffx.24306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein
LOC_Os02g18500OsAffx.12101.1.S1_at10/112+10772433..10773887Chlorophyllase-2, chloroplast precursor, putative
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24306.1.S1_at--1159--831Chr02:10753092..10753116 (25 bp)
ATGGCATCGGCTAGCTCCGCTGGTG
LOC_Os02g18470
OsAffx.24306.1.S1_at--322--8631Chr02:10753072..10753096 (25 bp)
TGGTGGCGCGCCATTATTGGAACAA
LOC_Os02g18470
OsAffx.24306.1.S1_at--77--10411Chr02:10753059..10753083 (25 bp)
TTATTGGAACAACCCTTTGCGACGC
LOC_Os02g18470
OsAffx.24306.1.S1_at--1023--4511Chr02:10753033..10753057 (25 bp)
GCCGCAGCAGTTTCTTGATCAGGAG
LOC_Os02g18470
OsAffx.24306.1.S1_at--442--8351Chr02:10752984..10753008 (25 bp)
GGCGGCGCGATGATCTATAACAACA
LOC_Os02g18470
OsAffx.24306.1.S1_at--48--2211Chr02:10752965..10752989 (25 bp)
ACAACAACGGTGACGGCGAGCACGA
LOC_Os02g18470
OsAffx.24306.1.S1_at--316--3471Chr02:10752887..10752911 (25 bp)
CAGTGGACAGCGTGTTCTTGGACAA
LOC_Os02g18470
OsAffx.24306.1.S1_at--318--6551Chr02:10752830..10752854 (25 bp)
GATTATGCCGAATTGATGCGCCCAT
LOC_Os02g18470
OsAffx.24306.1.S1_at--684--7991Chr02:10752766..10752790 (25 bp)
GGATGATCCGTTGGCTGCTCAGCAC
LOC_Os02g18470
OsAffx.24306.1.S1_at--31--6511Chr02:10752654..10752678 (25 bp)
GATATAATCAAGGTTGCGGCGGCCG
LOC_Os02g18470
OsAffx.24306.1.S1_at--242--2671Chr02:10752606..10752630 (25 bp)
AAGCCGCTCTCCGAATTTGACAAAG
LOC_Os02g18470
Target Sequence 
ATGGCATCGGCTAGCTCCGCTGGTGGCGCGCCATTATTGGAACAACCCTTTGCGACGCCGCCGCAGCAGTTTCTTGATCA
GGAGCCGGCGCCGGCTGGCCTCAACGACGGCGGCGCGATGATCTATAACAACAACGGTGACGGCGAGCACGACGCCGCGC
CGGCTGCGCAGCCGCCGGCCCGGTACTACAGCGGGCCAGTTCCGGCAGTGGACAGCGTGTTCTTGGACAAGATGCGGGAA
TATTTGATGGCTGATGCGAAGGGATTATGCCGAATTGATGCGCCCATCAACAATGGCGAACACGCCGCCGCCCCAGCGCC
GGCTGCGGATGATCCGTTGGCTGCTCAGCACGGCCACGGCGACGCGCCGCCGCTGCCGGTGCCGCCCGACGCGGCGGAGC
TAGAGCGGGTGGTCGGACATTTGTTGAGAGAAGTGGAGGATATAATCAAGGTTGCGGCGGCCGGTGGCTATGGAGGCTCG
TCGGACAAGCCGCTCTCCGAATTTGACAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis