Browse Element(s) Details


Os.11084.2.S1_x_at

Description gb:NM_188640.1
DB_XREF= gi:34904363
TID=Os.11084.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g132507/11expressed protein
LOC_Os12g203106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11084.2.S1_x_at--185--10072Chr12:11860097..11860120 (24 bp)
TAGTCGTCTCCACAACAGTGAACTG
NONE
Os.11084.2.S1_x_at--1099--3451Chr01:7382618..7382642 (25 bp)
CAGTGAACTGTGTCCGAGCCAAAAC
NONE
Os.11084.2.S1_x_at--899--5531Chr01:7382685..7382709 (25 bp)
GAAACCCTAACCATGGACTCGGGAG
NONE
Os.11084.2.S1_x_at--593--832Chr12:11861324..11861348 (25 bp)
ATGGAGACAACCTACCTACAAGAGT
LOC_Os12g20310
Os.11084.2.S1_x_at--470--2731NONE
AAGAACACTTCCAATCTCAAGCGCT
NONE
Os.11084.2.S1_x_at--701--2672Chr12:11862044..11862068 (25 bp)
AAGCGCTCCAGGAAGTTCCAGGCTG
LOC_Os12g20310
Os.11084.2.S1_x_at--403--8872Chr12:11862067..11862091 (25 bp)
TGATGAGAGGCTGTTCTCCCTGTCA
LOC_Os12g20310
Os.11084.2.S1_x_at--625--8712Chr12:11862087..11862111 (25 bp)
TGTCATCGGTTACATCTCCAGCGGT
LOC_Os12g20310
Os.11084.2.S1_x_at--115--9232Chr12:11862103..11862281 (25 bp)
TCCAGCGGTCGATGAACATATGGCT
LOC_Os12g20310
Os.11084.2.S1_x_at--560--1031Chr01:7384656..7384680 (25 bp)
AGGTCGTTCGAAAGGCGCAACCACT
LOC_Os01g13250
Os.11084.2.S1_x_at--486--2652Chr12:11862411..11862431 (21 bp)
AACCACTCCTGCAAACGGGCAAGGA
LOC_Os12g20310
Target Sequence 
TAGTCGTCTCCACAACAGTGAACTGTGTCCGAGCCAAAACAGAACGAACGCCCAAACAGGCAAACCACGAACTCGAACCC
TAGAAACCCTAACCATGGACTCGGGAGGCGGAGGAGGGGCATCGCACAAGGCAGCGTCAGGCTCTGCGCCCTCGGGGGCG
GCGGCCGCGAACCCCACAGCGATGCTCTCCGCCCTGATGAGCAAGCGCGCCAAGCTCCAGGAGGAGCTCCGCTCCATAGA
GCGCCAGGTTTATGAAATGGAGACAACCTACCTACAAGAGTCTAATCAATTCGGAAGTGTGCTAAAGGGTTTTGAATCAT
TCTTATCATCGTCAAAGAACACTTCCAATCTCAAGCGCTCCAGGAAGTTCCAGGCTGATGAGAGGCTGTTCTCCCTGTCA
TCGGTTACATCTCCAGCGGTCGATGAACATATGGCTGGACGAGATGATGGAAGAGAATATGGATCAGGTCGTTCGAAAGG
CGCAACCACTCCTGCAAACGGGCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11084.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis