Browse Element(s) Details


Os.3634.1.S1_a_at

Description gb:AK100714.1
DB_XREF= gi:32985923
TID=Os.3634.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115K12, full insert sequence.
FL= gb:AK100714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1328011/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3634.1.S1_a_at--473--2711Chr01:7402271..7402294 (24 bp)
AAGCATTTTGAGTCCCTTGTTGCAC
LOC_Os01g13280
Os.3634.1.S1_a_at--1160--2051Chr01:7402243..7402267 (25 bp)
ACTTCCATGAGCGTGAGCGCGTCAT
LOC_Os01g13280
Os.3634.1.S1_a_at--1020--1651Chr01:7402228..7402252 (25 bp)
AGCGCGTCATCCTGGATGCGTGCGA
LOC_Os01g13280
Os.3634.1.S1_a_at--145--9151Chr01:7402212..7402236 (25 bp)
TGCGTGCGACGCATACATATCTGGC
LOC_Os01g13280
Os.3634.1.S1_a_at--690--251Chr01:7402196..7402220 (25 bp)
ATATCTGGCGCAGTCGTTGGATCAT
LOC_Os01g13280
Os.3634.1.S1_a_at--912--6611Chr01:7402181..7402205 (25 bp)
GTTGGATCATCCTCTGCGAAGGGCA
LOC_Os01g13280
Os.3634.1.S1_a_at--1076--5611Chr01:7402142..7402166 (25 bp)
GACAACAACAGATCGTTTGCAGATT
LOC_Os01g13280
Os.3634.1.S1_a_at--110--1471Chr01:7402102..7402126 (25 bp)
AGAAGTACTCTGAACTGCTCAGGAA
LOC_Os01g13280
Os.3634.1.S1_a_at--2--9631Chr01:7402084..7402108 (25 bp)
TCAGGAAGGACTTGGCCGCGAACCG
LOC_Os01g13280
Os.3634.1.S1_a_at--112--5551Chr01:7402047..7402071 (25 bp)
GAAACTGACAAGAGACTCGCCGGCT
LOC_Os01g13280
Os.3634.1.S1_a_at--981--6391Chr01:7402011..7402035 (25 bp)
GATCGTTGAGTGTACCAGCAGCTAG
LOC_Os01g13280
Target Sequence 
AAGCATTTTGAGTCCCTTGTTGCACGCCACTTCCATGAGCGTGAGCGCGTCATCCTGGATGCGTGCGACGCATACATATC
TGGCGCAGTCGTTGGATCATCCTCTGCGAAGGGCACCAAGCATCCCCGCGACAACAACAGATCGTTTGCAGATTTCAAGA
AGTCACTGGAGAAGTACTCTGAACTGCTCAGGAAGGACTTGGCCGCGAACCGCACACACTTCCTGAAACTGACAAGAGAC
TCGCCGGCTGCCGCAGATGAGATCGTTGAGTGTACCAGCAGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3634.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis