Browse Element(s) Details


OsAffx.31820.1.S1_x_at

Description tigr:9629.m01298
TID=OsAffx.31820.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1322911/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g2032410/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g132607/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31820.1.S1_x_at--581--5872Chr12:11867600..11867624 (25 bp)
GAGCGCCCCACAGAAGGAGTCAGTT
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--753--7613Chr12:11867069..11867093 (25 bp)
GGGATTCCTCCTCAGTTCTAGGTTC
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--1075--10553Chr12:11867054..11867078 (25 bp)
TTCTAGGTTCCTTGCAGCGAAGAGC
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--812--1432Chr12:11867024..11867048 (25 bp)
AGAACCTGCGTATCTCAGAGGATAG
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--288--9773Chr12:11866869..11866892 (24 bp)
TAAGGATGCTCCTTCCCCAATGGAA
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--569--6173Chr12:11866811..11866835 (25 bp)
GAGGATCCGCAGTTGTGTGCTACTC
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--92--7333Chr12:11866795..11866819 (25 bp)
GTGCTACTCTTGCTTCTGATATCTA
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--448--253Chr12:11866777..11866801 (25 bp)
ATATCTACATGCACTTGCGCGAGGC
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--931--4612Chr12:11866360..11866783 (25 bp)
GCGAGGCCGAGTGGGTTCCATTTAA
LOC_Os12g20324
OsAffx.31820.1.S1_x_at--310--7491Chr01:7375788..7375812 (25 bp)
GTGGGTTCCATTTAATGACCTTCAT
LOC_Os01g13229
OsAffx.31820.1.S1_x_at--1138--10013Chr12:11866098..11866335 (25 bp)
TAGAACCAGTAGAAGCACATCATAT
LOC_Os12g20324
Target Sequence 
GAGCGCCCCACAGAAGGAGTCAGTTNTTCCTCCTAAAGTGCTTAGNATTGTTCCNACTGCTGCACCNGCACCTGTCACTG
TACCCTGCAGCAGCTTCGTCTCCCCTATGCATTCAGGAGATTCAGNTNNNGTTNACNNNNNGNNNNNNANNTNNNNNNCN
NNNNNNNNNCCAGACTTTGAGTACATTGATAATGGGGATTCCTCCTCAGTTCTAGGTTCCTTGCAGCGAAGAGCAAACGA
GAACCTGCGTATCTCAGAGGATAGAGATGTTGAAGAAACTAAGTGGAATAAGGATGCTCCTTCCCCAATGGAAATCGACC
AAATTTGTGATGTTGACAATAACTACGAGGATCCGCAGTTGTGTGCTACTCTTGCTTCTGATATCTACATGCACTTGCGC
GAGGCCGAGTGGGTTCCATTTAATGACCTTCATATTGAAATTCCTTATAGAACCAGTAGAAGCACATCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31820.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis