Browse Element(s) Details


Os.4195.1.S1_at

Description gb:AB024986.1
DB_XREF= gi:6331694
GEN=cycA1;os;1
TID=Os.4195.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4195 (NCBI UniGene Cluster)
DEF=Oryza sativa cycA1;os;1 mRNA for cyclin, complete cds.
PROD=cyclin
FL= gb:AK063476.1 gb:AB024986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1326011/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g203249/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g132293/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4195.1.S1_at--1134--52Chr01:7386807..7386831 (25 bp)
ATTGCACCGCCTTTTTAGCGTTGGT
LOC_Os01g13260
Os.4195.1.S1_at--734--7633Chr12:11864865..11864889 (25 bp)
GGGAGTAACCTTCCTGCAATCAGGG
LOC_Os12g20324
Os.4195.1.S1_at--564--272Chr12:11864705..11864728 (24 bp)
ATACCGACCGAATTCTTTCGCGACG
LOC_Os12g20324
Os.4195.1.S1_at--961--10291Chr01:7386602..7386626 (25 bp)
TTTCGCGACGCAACATGCTGAACTA
LOC_Os01g13260
Os.4195.1.S1_at--1072--1233Chr12:11864639..11864663 (25 bp)
AGTTGCTGACTGAATTCTTCCTCCA
LOC_Os12g20324
Os.4195.1.S1_at--537--6632Chr12:11864598..11864622 (25 bp)
GTTGTGCCGTAGACCGTTCAGATAA
LOC_Os12g20324
Os.4195.1.S1_at--414--6272Chr12:11864469..11864493 (25 bp)
GATGTGCTTTCTTCTATCTTCTTTT
LOC_Os12g20324
Os.4195.1.S1_at--510--10392Chr12:11864448..11864472 (25 bp)
TTTTCCCTGTACCTAGATGATCCAT
LOC_Os12g20324
Os.4195.1.S1_at--13--492Chr12:11864404..11864428 (25 bp)
ATCGGAGTCCTGCAGCAAAGCTTTA
LOC_Os12g20324
Os.4195.1.S1_at--597--10232Chr12:11864370..11864394 (25 bp)
TTTGATATTAGCTGCCAACCTGGGC
LOC_Os12g20324
Os.4195.1.S1_at--919--3892Chr12:11864351..11864375 (25 bp)
CTGGGCGTCTCCTAGGTTGATGTAT
LOC_Os12g20324
Target Sequence 
ATTGCACCGCCTTTTTAGCGTTGGTCCCGGGAGTAACCTTCCTGCAATCAGGGAGAAGTATACCCAACATAAGTACAAAT
TTGTGGCGAAGAAGCCCTGCCCACCCTCAATACCGACCGAATTCTTTCGCGACGCAACATGCTGAACTAGAAAAATAAAC
CAAGGATTAGTTACAGTTGCTGACTGAATTCTTCCTCCAGAGGCACCTATGCCAGGTTGTGCCGTAGACCGTTCAGATAA
NCTTGATGCAAGGCATGCTGCTTGCCCCCCCCCCCCCCCCCCCTGGTTCTTTCAGGNGGTTTGGCTGAGTGTAGATANAT
CGATGCTTCTGCTGTGTGTGGTAACTTTTATGGTACTGATGTGCTTTCTTCTATCTTCTTTTCCCTGTACCTAGATGATC
CATGGTTTTCAGTACTTTGTACATCGGAGTCCTGCAGCAAAGCTTTAAACATCTTGTTTGATATTAGCTGCCAACCTGGG
CGTCTCCTAGGTTGATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis