Browse Element(s) Details


Os.14122.1.S1_at

Description gb:AK065256.1
DB_XREF= gi:32975274
TID=Os.14122.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002J14, full insert sequence.
FL= gb:AK065256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1321011/11DREPP plasma membrane polypeptide family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14122.1.S1_at--1080--1671Chr01:7360941..7360965 (25 bp)
AGCCGGAGAAGCAGTAGTGATCACT
LOC_Os01g13210
Os.14122.1.S1_at--46--8851Chr01:7360924..7360948 (25 bp)
TGATCACTCCAGAAGCAAGCAAAGC
LOC_Os01g13210
Os.14122.1.S1_at--670--9771Chr01:7360847..7360871 (25 bp)
TAATGTGATCACACTACTCTCTCTC
LOC_Os01g13210
Os.14122.1.S1_at--342--2811Chr01:7360793..7360817 (25 bp)
AAGATACACACACTTGGCATGCAAG
LOC_Os01g13210
Os.14122.1.S1_at--329--4311Chr01:7360735..7360759 (25 bp)
CCTTTCATCTCTCTCCTATATATAT
LOC_Os01g13210
Os.14122.1.S1_at--1102--7231Chr01:7360705..7360729 (25 bp)
GTCGCCTCATCGGTTGTAAATTAAT
LOC_Os01g13210
Os.14122.1.S1_at--837--10851Chr01:7360618..7360642 (25 bp)
TTGGTCATGATCATAAGGAGCTTGT
LOC_Os01g13210
Os.14122.1.S1_at--939--8071Chr01:7360602..7360626 (25 bp)
GGAGCTTGTGTATATTATCCATATC
LOC_Os01g13210
Os.14122.1.S1_at--562--2191Chr01:7360559..7360583 (25 bp)
ACAAATTTTCGGCTTGAGGTGTGAT
LOC_Os01g13210
Os.14122.1.S1_at--166--10191Chr01:7360523..7360547 (25 bp)
TATATATGCACCCTCTCCAATTGTA
LOC_Os01g13210
Os.14122.1.S1_at--662--5091Chr01:7360516..7360540 (25 bp)
GCACCCTCTCCAATTGTAATACAAA
LOC_Os01g13210
Target Sequence 
AGCCGGAGAAGCAGTAGTGATCACTCCAGAAGCAAGCAAAGCNNNNNTAAGCTAGCTTAGCTAAGCTTAGCTGATGGTAA
TTAAAATCAAGATTAAGGTTAATGTGATCACACTACTCTCTCTCAGTCTCTGCACNAAAAAGTAAGTAAAAATCAAGATA
CACACACTTGGCATGCAAGAACATTTGTTATTGAATTCTTTCACCCTTTGNATCCTTTCATCTCTCTCCTATATATATAT
ATNNNNNNGGTCGCCTCATCGGTTGTAAATTAATTTATGTGGGGTTTCTTGTTTTTTGGGGGTGATTAAACATGTGTAAT
TATATTCATATGTTTGTTGGTCATGATCATAAGGAGCTTGTGTATATTATCCATATCTTTTTTTTTCTTTTGTTTACAAA
TTTTCGGCTTGAGGTGTGATGAAGATAGACATATATATGCACCCTCTCCAATTGTAATACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis