Browse Element(s) Details


Os.27540.1.S1_at

Description gb:AK069972.1
DB_XREF= gi:32979996
TID=Os.27540.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037L20, full insert sequence.
FL= gb:AK061778.1 gb:AK069972.1 gb:AK104113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1319011/11Histidinol dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0004399molecular_functionhistidinol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27540.1.S1_at--246--2631Chr01:7348638..7348662 (25 bp)
AACCGTGTAGATTTGTTACCATGAT
LOC_Os01g13190
Os.27540.1.S1_at--890--7551Chr01:7348671..7348695 (25 bp)
GGGCCAACTTGGATGCAGAGAACAA
LOC_Os01g13190
Os.27540.1.S1_at--806--5251Chr01:7348696..7348720 (25 bp)
GAATCTGTGAACACCCTAATGAGAA
LOC_Os01g13190
Os.27540.1.S1_at--91--1071Chr01:7348720..7348744 (25 bp)
AGGGATGGTCCAGCTGTTTCTCGAA
LOC_Os01g13190
Os.27540.1.S1_at--935--6832Chr01:7348735..7348759 (25 bp)
GTTTCTCGAAATAAGGCTCATCCAT
LOC_Os01g13190
Os.27540.1.S1_at--747--8311Chr01:7348749..7348773 (25 bp)
GGCTCATCCATTTTGATACATCTTT
LOC_Os01g13190
Os.27540.1.S1_at--62--7951Chr01:7348851..7348875 (25 bp)
GGATATGATCCAGCTATTACTCGAA
LOC_Os01g13190
Os.27540.1.S1_at--817--131Chr01:7348866..7348890 (25 bp)
ATTACTCGAAATAAGGCCCATCCAT
LOC_Os01g13190
Os.27540.1.S1_at--443--2951Chr01:7348878..7348902 (25 bp)
AAGGCCCATCCATTTTGAATCTTTG
LOC_Os01g13190
Os.27540.1.S1_at--154--10751Chr01:7348892..7348916 (25 bp)
TTGAATCTTTGGTCCGTCTATTGAA
LOC_Os01g13190
Os.27540.1.S1_at--309--6851Chr01:7348923..7348947 (25 bp)
GTTTGTTGACTATGTTACTACTACT
LOC_Os01g13190
Target Sequence 
AACCGTGTAGATTTGTTACCATGATTGTTCTAGGGGCCAACTTGGATGCAGAGAACAAGAATCTGTGAACACCCTAATGA
GAAGGGATGGTCCAGCTGTTTCTCGAAATAAGGCTCATCCATTTTGATACATCTTTGAATATAAAGTTTGTTTGATTGTG
TTACACTTTCAAGTATTCAAGAGGACGAAATCTGTGAAGACTGTAAGGAAAAGGGATATGATCCAGCTATTACTCGAAAT
AAGGCCCATCCATTTTGAATCTTTGGTCCGTCTATTGAANGCAAAGTTTGTTGACTATGTTACTACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis