Browse Element(s) Details


Os.10105.3.S1_x_at

Description gb:AJ575226.1
DB_XREF= gi:46367659
TID=Os.10105.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) partial mRNA for VHS1 protein.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1316011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10105.3.S1_x_at--1155--5071Chr01:7334765..7334789 (25 bp)
GCAGCCTTGCATGATAGCTCATCAA
LOC_Os01g13160
Os.10105.3.S1_x_at--770--231Chr01:7334811..7334835 (25 bp)
ATATATTTGGCAGCAGCCCTGAGCC
LOC_Os01g13160
Os.10105.3.S1_x_at--59--6831Chr01:7334889..7334913 (25 bp)
GTTTGAACCTTAATGGAACTGCCCA
LOC_Os01g13160
Os.10105.3.S1_x_at--507--2991Chr01:7334954..7334978 (25 bp)
AATGTTTCACAGCTCTTTGACATGA
LOC_Os01g13160
Os.10105.3.S1_x_at--634--5731Chr01:7335016..7335040 (25 bp)
GACTGGTATTCTTGGCCAAAGCTTT
LOC_Os01g13160
Os.10105.3.S1_x_at--292--10431Chr01:7335040..7335064 (25 bp)
TTATCAGCAACAGCAGGTTCCCTTG
LOC_Os01g13160
Os.10105.3.S1_x_at--779--4611Chr01:7335052..7335076 (25 bp)
GCAGGTTCCCTTGCAGTACAACTTG
LOC_Os01g13160
Os.10105.3.S1_x_at--710--1171Chr01:7335066..7335090 (25 bp)
AGTACAACTTGCCATCACAGATGCT
LOC_Os01g13160
Os.10105.3.S1_x_at--230--711Chr01:7335134..7335158 (25 bp)
ATGAGTGTTCTTCTTGCTCAGCAGC
LOC_Os01g13160
Os.10105.3.S1_x_at--808--611Chr01:7335189..7335213 (25 bp)
ATGCTGGGTTGGGACATTCGTCTTT
LOC_Os01g13160
Os.10105.3.S1_x_at--437--2291Chr01:7335232..7335256 (25 bp)
AAATGCATCTGTGCTTCCTGATATC
LOC_Os01g13160
Target Sequence 
GCAGCCTTGCATGATAGCTCATCAATAAACAAAAATGAATTGTCAGATATATTTGGCAGCAGCCCTGAGCCATTCTTCCA
AGAAAGAGTAGAGGATAAAGGAACCGTGAATGATTTGATGGCTGGTTTGAACCTTAATGGAACTGCCCAAGCTCAGCCTG
GGATTAAAACAGAATCTAACAATACTGTCAATGTTTCACAGCTCTTTGACATGAACAGTCAGACAACAAATGTGGCTAAT
TCTGCAGCAATGACTGGTATTCTTGGCCAAAGCTTTTATCAGCAACAGCAGGTTCCCTTGCAGTACAACTTGCCATCACA
GATGCTGTTAAATCCAGCATTTGCTGGGCAGCAATTAAACTATGGTGCTATGAGTGTTCTTCTTGCTCAGCAGCAGCAGC
TGCTGCAAAATCTAGGAAATTTCAATGCTGGGTTGGGACATTCGTCTTTGAATGCAATGAACAGCGGAAATGCATCTGTG
CTTCCTGATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10105.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis