Browse Element(s) Details


Os.3627.1.S1_a_at

Description gb:AK119659.1
DB_XREF= gi:37989282
TID=Os.3627.1
CNT=7
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H11, full insert sequence.
FL= gb:AK119659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1317010/11Ubiquitin-conjugating enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3627.1.S1_a_at--954--8331NONE
GGCGGCCTCCAGAGCACTTCGCAGA
NONE
Os.3627.1.S1_a_at--1054--1491Chr01:7341533..7341557 (25 bp)
AGCACTTCGCAGACCTTGTTACCAG
LOC_Os01g13170
Os.3627.1.S1_a_at--1111--1691Chr01:7341556..7341580 (25 bp)
AGCCACTTCAGGGAGCGCGGGCACA
LOC_Os01g13170
Os.3627.1.S1_a_at--1113--8231Chr01:7341575..7341599 (25 bp)
GGCACACCATCCTGGCAGCATGCAG
LOC_Os01g13170
Os.3627.1.S1_a_at--1145--6931Chr01:7341749..7341773 (25 bp)
GTAGACGCCCCACGTTCAACGACAA
LOC_Os01g13170
Os.3627.1.S1_a_at--288--10091Chr01:7341890..7341914 (25 bp)
TAGGAGGCGCCCGTTATGCAGCAGA
LOC_Os01g13170
Os.3627.1.S1_a_at--623--4151Chr01:7341897..7341921 (25 bp)
CGCCCGTTATGCAGCAGAAGTGGTG
LOC_Os01g13170
Os.3627.1.S1_a_at--967--7511Chr01:7341927..7341951 (25 bp)
GTGGATGGATTAGTCTGCTTTGCCT
LOC_Os01g13170
Os.3627.1.S1_a_at--1031--6531Chr01:7341934..7341958 (25 bp)
GATTAGTCTGCTTTGCCTAACTGCA
LOC_Os01g13170
Os.3627.1.S1_a_at--103--7171Chr01:7341939..7341963 (25 bp)
GTCTGCTTTGCCTAACTGCAGAGAA
LOC_Os01g13170
Os.3627.1.S1_a_at--387--2631Chr01:7342038..7342062 (25 bp)
AACCTGTTGACCAAGATGATGAATT
LOC_Os01g13170
Target Sequence 
GGCGGCCTCCAGAGCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGG
TACTACATGGAAGGCCACAAGGTCGGATCGGTGNTCCCCGAAGAGAAGGANCCGGAGTACGGCGACGCGGGAGCATCCAC
CAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCNCTGAAGCCGCGGCCGGACAAGGTGGATTCCGTCAGTAGACGCCCCA
CGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACACGGCCAAGTTC
CTCGCCGAGAAGGTGAAGAAGAGCTCTGGTGCAACAACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAGCAGAAGTGGT
GGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTNNTTTTTATTTCGTAGT
ACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3627.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis