Browse Element(s) Details


Os.46008.1.S1_at

Description gb:NM_188648.1
DB_XREF= gi:34904379
TID=Os.46008.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g133204/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46008.1.S1_at--111--1371Chr01:7427740..7427764 (25 bp)
AGAGCACCGGCATCTCCGTGCACGG
LOC_Os01g13320
Os.46008.1.S1_at--1083--1791Chr01:7428022..7428046 (25 bp)
ACCGCGTCATCAAGCTGCCGGAGGA
LOC_Os01g13320
Os.46008.1.S1_at--366--8551Chr01:7428052..7428076 (25 bp)
TGGAGTTCACCGTCGGGAGGTTCAT
LOC_Os01g13320
Os.46008.1.S1_at--437--6731Chr01:7428071..7428095 (25 bp)
GTTCATCGGCGGCTACTCCTGGCTG
LOC_Os01g13320
Os.46008.1.S1_at--841--8411Chr01:7428123..7428147 (25 bp)
GGCCTGACCGTGTGAGGCGACTCTC
NONE
Os.46008.1.S1_at--1048--891Chr01:7428137..7428161 (25 bp)
AGGCGACTCTCACTGACTCATGGTA
NONE
Os.46008.1.S1_at--478--1971Chr01:7428148..7428172 (25 bp)
ACTGACTCATGGTAGCTTAAGCCAA
NONE
Os.46008.1.S1_at--977--9791Chr01:7428165..7428189 (25 bp)
TAAGCCAATAAGTTGCATTTGCTAA
NONE
Os.46008.1.S1_at--83--1231Chr01:7428175..7428199 (25 bp)
AGTTGCATTTGCTAATTGGGAGATA
NONE
Os.46008.1.S1_at--266--6931Chr01:7428213..7428237 (25 bp)
GTAGGTGTAATTTTTCAAGTATGAT
NONE
Os.46008.1.S1_at--522--8871Chr01:7428234..7428258 (25 bp)
TGATGTAATCATCTACACATGCTAA
NONE
Target Sequence 
AGAGCACCGGCATCTCCGTGCACGGCTGCCGCCTCCTCCCTTCGCCGGNNNNNNANNTNNCNNCNNNNNNGNNNNGCNNN
NGCGNNGNGACNTACNTCGGGCGGCNATGGAAGCNGTACTCGAGGGCGGTGTACATGATGTCGTACATNGCGGGCCACGT
CCACGCCGCCGGCTGGCTCGCCTGGGACGCGTCGNGGGCGCGCGCCGGACACGCTCTACTACGGCGAGTACCGCAACTCC
GGCCCCGGCGCGGCGGTCGGCGGGCGCGTGCCATGGCCGGGCCACCGCGTCATCAAGCTGCCGGAGGAGGCCATGGAGTT
CACCGTCGGGAGGTTCATCGGCGGCTACTCCTGGCTGCCGCCCACCGGCGTCGCCTTCGTAGCCGGCCTGACCGTGTGAG
GCGACTCTCACTGACTCATGGTAGCTTAAGCCAATAAGTTGCATTTGCTAATTGGGAGATAGGTGGTAGTAAAAGTAGGT
GTAATTTTTCAAGTATGATGTAATCATCTACACATGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis