Browse Element(s) Details


Os.6809.2.S1_x_at

Description gb:NM_188653.1
DB_XREF= gi:34904389
TID=Os.6809.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1337011/11Ubiquitin ligase SINAT3, putative, expressed
LOC_Os07g281701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6809.2.S1_x_at--579--1351Chr01:7448643..7448667 (25 bp)
AGAGATCTTCCCATACTACAGCAAG
LOC_Os01g13370
Os.6809.2.S1_x_at--665--5411Chr01:7448609..7448633 (25 bp)
GAAGCGCAGTGCATGTTTAGACCAT
LOC_Os01g13370
Os.6809.2.S1_x_at--1132--6811Chr01:7448595..7448619 (25 bp)
GTTTAGACCATACAATTGCCCTTAT
LOC_Os01g13370
Os.6809.2.S1_x_at--793--251Chr01:7448542..7448566 (25 bp)
ATATCCCTTATCTTGTTGCCCATTT
LOC_Os01g13370
Os.6809.2.S1_x_at--243--1271Chr01:7448468..7448492 (25 bp)
AGATATGTCAAGTCCAACCCACGAG
LOC_Os01g13370
Os.6809.2.S1_x_at--1010--2271Chr01:7448437..7448460 (24 bp)
AAATGCCACCTGGATGCTGACGGTC
LOC_Os01g13370
Os.6809.2.S1_x_at--730--7811Chr01:7448282..7448306 (25 bp)
GGTCTTCCACTGTTTCGGGCAATAC
LOC_Os01g13370
Os.6809.2.S1_x_at--38--2051Chr01:7448247..7448271 (25 bp)
ACTTTGAGGCCTTCCAGCTTGGGAT
LOC_Os01g13370
Os.6809.2.S1_x_at--960--6232Chr07:16447290..16447568 (25 bp)
GATGGCACCAGTCTATATGGCCTTT
LOC_Os07g28170
Os.6809.2.S1_x_at--599--291Chr01:7448163..7448187 (25 bp)
ATAGCTACAGCCTTGAGGTCGGCGC
LOC_Os01g13370
Os.6809.2.S1_x_at--805--8971Chr01:7448001..7448025 (25 bp)
TGAAGCTGAGGATCACCGGCCGGAT
LOC_Os01g13370
Target Sequence 
AGAGATCTTCCCATACTACAGCAAGATAAAACATGAAGCGCAGTGCATGTTTAGACCATACAATTGCCCTTATGCTGGTT
CTGAGTGTGCTGTGGTGGGTGATATCCCTTATCTTGTTGCCCATTTGAGGGATGATCACAAAGTTGATATGCATAGTGGT
TGCACATTCAACCATAGATATGTCAAGTCCAACCCACGAGAAGTCGAAAATGCCACCTGGATGCTGACGGTCTTCCACTG
TTTCGGGCAATACTTCTGCCTGCACTTTGAGGCCTTCCAGCTTGGGATGGCACCAGTCTATATGGCCTTTCTCCGTTTCA
TGGGTGATGAAAATGAGGCAAGGAACTATAGCTACAGCCTTGAGGTCGGCGCAAACGGCAGGAAAATGGTATGGGAGGGC
ACCCCCCGAAGTGTCCGGGACAGCCACCGGAAGGTGCGGGACAGCCATGATGGCCTCATCATCCAGAGGAACATGGCGCT
GTTCTTCTCGGGGGGCGACCGAAAGGAGCTGAAGCTGAGGATCACCGGCCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6809.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis