Browse Element(s) Details


Os.10003.1.S1_at

Description gb:CF297014
DB_XREF= gi:33666047
DB_XREF=30DGS--07-K02.g1
CLONE=30DGS--07-K02
TID=Os.10003.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10003.1.S1_at--441--8631Chr01:7455722..7455746 (25 bp)
TGGTGGCCTATCAAGGCGTACCGGC
LOC_Os01g13390
Os.10003.1.S1_at--613--1531Chr01:7455797..7455821 (25 bp)
AGCATGGACGATGTGGCTTCCGGCA
LOC_Os01g13390
Os.10003.1.S1_at--324--1371Chr01:7456305..7456329 (25 bp)
AGAGCTGAGAGGTGATCCAGTCCAA
LOC_Os01g13390
Os.10003.1.S1_at--569--6931Chr01:7456379..7456403 (25 bp)
GTAGGAGGCAGTGTGCATCACCAAG
LOC_Os01g13390
Os.10003.1.S1_at--118--8011Chr01:7456403..7456427 (25 bp)
GGATGGCTTCCAGAATTATTTCAGA
LOC_Os01g13390
Os.10003.1.S1_at--643--10491Chr01:7456431..7456455 (25 bp)
TTAACATTCTCTAGGCTGGACAAGG
LOC_Os01g13390
Os.10003.1.S1_at--386--7991Chr01:7456454..7456478 (25 bp)
GGATGTTCAAAACTTCAACCCCAGC
LOC_Os01g13390
Os.10003.1.S1_at--1141--4451Chr01:7456477..7456501 (25 bp)
GCCTGCAAAACTCTGTAGCTGACGT
LOC_Os01g13390
Os.10003.1.S1_at--453--7071Chr01:7456500..7456524 (25 bp)
GTAATATCCCAGTGCCTCATGGCAT
LOC_Os01g13390
Os.10003.1.S1_at--699--3491Chr01:7456517..7456541 (25 bp)
CATGGCATTCATGGGTTGCATATTG
LOC_Os01g13390
Os.10003.1.S1_at--270--6671Chr01:7456531..7456555 (25 bp)
GTTGCATATTGCTACCAGGTGTAAT
LOC_Os01g13390
Target Sequence 
TGGTGGCCTATCAAGGCGTACCGGCCGTGCCCCGGNTTCGTCGCCTCCGGCGGCCGGTACCGGAGGCAGGGGCAGAGCAT
GGACGATGTGGCTTCCGGCAGAGGGAAGAAGGTCCCCTCCAACAACAAAAAAAATNCAAAAGCGAGAGCTGAGAGGTGAT
CCAGTCCAAGAAATTTCAAGCCTGGAAATGTAAGCAAATTTGTCTNTGAGGTGATCAAGTAGGAGGCAGTGTGCATCACC
AAGGATGGCTTCCAGAATTATTTCAGATTTTTAACATTCTCTAGGCTGGACAAGGATGTTCAAAACTTCAACCCCAGCCT
GCAAAACTCTGTAGCTGACGTAATATCCCAGTGCCTCATGGCATTCATGGGTTGCATATTGCTACCAGGTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis