Browse Element(s) Details


OsAffx.11032.1.S1_at

Description tigr:9629.m01312
TID=OsAffx.11032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1338011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11032.1.S1_at--741--2291Chr01:7452813..7452837 (25 bp)
AAATGTCATTTGTCCCTCTACTTAT
LOC_Os01g13380
OsAffx.11032.1.S1_at--291--3811Chr01:7452781..7452805 (25 bp)
CTCCAGGCTCGGTGCAACAATTGGG
LOC_Os01g13380
OsAffx.11032.1.S1_at--1050--6231Chr01:7452716..7452740 (25 bp)
GATGGTAGATCCCTTAAGTCAATAT
LOC_Os01g13380
OsAffx.11032.1.S1_at--996--2831Chr01:7452701..7452725 (25 bp)
AAGTCAATATCATGTGTGTTCTTCA
LOC_Os01g13380
OsAffx.11032.1.S1_at--203--7431Chr01:7452686..7452710 (25 bp)
GTGTTCTTCAGTGATAAGGCATGCA
LOC_Os01g13380
OsAffx.11032.1.S1_at--1114--351Chr01:7452673..7452697 (25 bp)
ATAAGGCATGCACTATCACTACCAC
LOC_Os01g13380
OsAffx.11032.1.S1_at--34--3611Chr01:7452642..7452666 (25 bp)
CATTGGAGCTCCACAAAGGACAGTT
LOC_Os01g13380
OsAffx.11032.1.S1_at--479--951Chr01:7452626..7452650 (25 bp)
AGGACAGTTGGTACATGAGCATGAT
LOC_Os01g13380
OsAffx.11032.1.S1_at--602--5611Chr01:7452594..7452618 (25 bp)
GACAGCCAACACTGGAGTTCCGTGA
LOC_Os01g13380
OsAffx.11032.1.S1_at--871--10631Chr01:7452577..7452601 (25 bp)
TTCCGTGAGACCAGGAACTTGAGGA
LOC_Os01g13380
OsAffx.11032.1.S1_at--983--7891Chr01:7452552..7452576 (25 bp)
GGTTGTGGCTACATAGGAGCTTGAC
LOC_Os01g13380
Target Sequence 
AAATGTCATTTGTCCCTCTACTTATCTTCCACCTCCAGGCTCGGTGCAACAATTGGGGTGGGAGGCGGAGTCATGGAGCT
GATAGGGTCAACGAGATGATGGTAGATCCCTTAAGTCAATATCATGTGTGTTCTTCAGTGATAAGGCATGCACTATCACT
ACCACCTACCACATTGGAGCTCCACAAAGGACAGTTGGTACATGAGCATGATGAGAAAGGACAGCCAACACTGGAGTTCC
GTGAGACCAGGAACTTGAGGAGGTTGTGGCTACATAGGAGCTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis