Browse Element(s) Details


Os.3822.2.S1_x_at

Description gb:AK064696.1
DB_XREF= gi:32974714
TID=Os.3822.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F11, full insert sequence.
FL= gb:AK064696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1343011/11CAS/CSE protein, C-terminus containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3822.2.S1_x_at--1093--8811Chr01:7478405..7478429 (25 bp)
TGTTGTAATTCCTAACCTGCGGTTA
LOC_Os01g13430
Os.3822.2.S1_x_at--748--10831Chr01:7478232..7478256 (25 bp)
TTGTGTCAGCACAGGTCCAGCAGAT
LOC_Os01g13430
Os.3822.2.S1_x_at--931--4951Chr01:7478200..7478224 (25 bp)
GCATATGCAGCTGATCGGACGAACA
LOC_Os01g13430
Os.3822.2.S1_x_at--426--311Chr01:7478150..7478174 (25 bp)
ATACCTTGTTATTTCTCTTATGCAG
LOC_Os01g13430
Os.3822.2.S1_x_at--1085--9551Chr01:7478135..7478159 (25 bp)
TCTTATGCAGAAGCCTGGTGCCACA
LOC_Os01g13430
Os.3822.2.S1_x_at--1021--8051Chr01:7478084..7478108 (25 bp)
GGAGAGCTTCTTTACATCTGTGATC
LOC_Os01g13430
Os.3822.2.S1_x_at--122--9891Chr01:7478072..7478096 (25 bp)
TACATCTGTGATCGTGCCTGAGCTG
LOC_Os01g13430
Os.3822.2.S1_x_at--1124--9031Chr01:7478049..7478073 (25 bp)
TGCAGGCCCCTGATTGGGAATCTGA
LOC_Os01g13430
Os.3822.2.S1_x_at--42--5111Chr01:7477957..7477981 (25 bp)
GCACTGGCACTGCTTCCAAGTGTAA
LOC_Os01g13430
Os.3822.2.S1_x_at--623--2991Chr01:7477909..7477933 (25 bp)
AATGTTGTCCATTCATATGCTGCGA
LOC_Os01g13430
Os.3822.2.S1_x_at--168--9111Chr01:7477892..7477916 (25 bp)
TGCTGCGACCTTTATTGAGAACCTT
LOC_Os01g13430
Target Sequence 
TGTTGTAATTCCTAACCTGCGGTTACGGGATGATGATGAGGAGCTGTTTGAGGGGAACTGGGTGGAATATGTTAGGCGTG
ATGCCGAGGGGAGTGATGCGGATACACTGAGGCGGGCTGCATGCCGGTTGCTGCGGGGGCTTGCGGCAAACTACCGGGAG
CAGGTGGCTGCACTTGTGTCAGCACAGGTCCAGCAGATGTTGGCTGCATATGCAGCTGATCGGACGAACAACTGGAAAGA
GAAGGATGCTGCAATATACCTTGTTATTTCTCTTATGCAGAAGCCTGGTGCCACAGGAGGTGGGACACCGGTGGTTGATA
TGGAGAGCTTCTTTACATCTGTGATCGTGCCTGAGCTGCAGGCCCCTGATTGGGAATCTGAACCAATGCTGAAGGCAACT
GTGCTGAGGTTCTTGAAGGAATTCAAGGATCAAATCCCCAAAGCCACTGCACTGGCACTGCTTCCAAGTGTAATAAGGTT
CCTGATACACGAGTCAAATGTTGTCCATTCATATGCTGCGACCTTTATTGAGAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3822.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis