Browse Element(s) Details


Os.3828.2.S1_x_at

Description gb:NM_188667.1
DB_XREF= gi:34904417
TID=Os.3828.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1347011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13480Os.36648.1.S1_x_at10/111+7514014..7515543Glutaredoxin family protein, expressed
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein
LOC_Os01g13500OsAffx.23226.1.S1_x_at4/111+7525451..7526938hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3828.2.S1_x_at--191--8171Chr01:7506556..7506580 (25 bp)
GGAACCATCTTTTCCGGGACAGAAT
LOC_Os01g13470
Os.3828.2.S1_x_at--313--1471Chr01:7506576..7506600 (25 bp)
AGAATGGCTTCAACAGTCCCTAATG
LOC_Os01g13470
Os.3828.2.S1_x_at--160--2991Chr01:7506597..7506621 (25 bp)
AATGTGCAGCCACCTTTTGGTTTGG
LOC_Os01g13470
Os.3828.2.S1_x_at--837--7971Chr01:7506623..7506647 (25 bp)
GGATCCTCAGTTTGGTTCATATGCG
LOC_Os01g13470
Os.3828.2.S1_x_at--1082--7931Chr01:7506673..7506697 (25 bp)
GGATTTTTCCTAATGTGCCTCAGTT
LOC_Os01g13470
Os.3828.2.S1_x_at--430--1311Chr01:7506730..7506754 (25 bp)
AGATGTCTGCTCCTTGGACCATGAA
LOC_Os01g13470
Os.3828.2.S1_x_at--890--7751Chr01:7507615..7507639 (25 bp)
GGTGATCCAATTTCATTGCCTGATA
LOC_Os01g13470
Os.3828.2.S1_x_at--689--4271Chr01:7507762..7507786 (25 bp)
CCTGGTCAGCCATCTATCGTATCAA
LOC_Os01g13470
Os.3828.2.S1_x_at--558--9811Chr01:7507790..7507814 (25 bp)
TAACTGCAGATGTCATGGTCCCAAA
LOC_Os01g13470
Os.3828.2.S1_x_at--90--151Chr01:7507815..7507839 (25 bp)
ATTAGTTTTACCTTCTCTATGTGGG
LOC_Os01g13470
Os.3828.2.S1_x_at--189--2491Chr01:7507858..7508131 (25 bp)
AACAGAATTCGTAGTGACCATGGAC
LOC_Os01g13470
Target Sequence 
GGAACCATCTTTTCCGGGACAGAATGGCTTCAACAGTCCCTAATGTGCAGCCACCTTTTGGTTTGGTGGATCCTCAGTTT
GGTTCATATGCGGGAAACCATGATTCTATATCTCCTAGGATTTTTCCTAATGTGCCTCAGTTTCATAAAGATTTTATAGG
ACGACCATTGGATGAGATGTCTGCTCCTTGGACCATGAAGGGCATGCAGGTTGTTGGTGATCCAATTTCATTGCCTGATA
TCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGAT
GTCATGGTCCCAAAATTAGTTTTACCTTCTCTATGTGGGGAAGATGGAGGCTGTTTAAACAGAATTCGTAGTGACCATGG
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3828.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis