Browse Element(s) Details


OsAffx.23226.1.S1_x_at

Description gb:NM_188670.1
DB_XREF= gi:34904423
TID=OsAffx.23226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g135004/11hypothetical protein
LOC_Os01g134901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13480Os.36648.1.S1_x_at10/111+7514014..7515543Glutaredoxin family protein, expressed
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein
LOC_Os01g13500OsAffx.23226.1.S1_x_at4/111+7525451..7526938hypothetical protein
LOC_Os01g13510OsAffx.11035.1.S1_at11/111+7540473..7541312hypothetical protein
LOC_Os01g13520Os.22269.1.S1_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13520Os.22269.2.S1_x_at11/111+7543747..7548677Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23226.1.S1_x_at--174--1711Chr01:7525421..7525445 (25 bp)
ACCAGCTGCTTTTTTCCTCCGTCAG
NONE
OsAffx.23226.1.S1_x_at--610--10371Chr01:7525430..7525454 (25 bp)
TTTTTTCCTCCGTCAGCGGCGATGG
NONE
OsAffx.23226.1.S1_x_at--804--10291Chr01:7525433..7525457 (25 bp)
TTTCCTCCGTCAGCGGCGATGGCAT
NONE
OsAffx.23226.1.S1_x_at--727--6231Chr01:7525450..7525474 (25 bp)
GATGGCATGGCGATGCGATGCTTCC
NONE
OsAffx.23226.1.S1_x_at--439--871Chr01:7525456..7525480 (25 bp)
ATGGCGATGCGATGCTTCCCCGAGG
LOC_Os01g13500
OsAffx.23226.1.S1_x_at--929--10651Chr01:7525471..7525495 (25 bp)
TTCCCCGAGGCCAGGATGTGAGACG
LOC_Os01g13500
OsAffx.23226.1.S1_x_at--837--9391Chr01:7525563..7525587 (25 bp)
TCGTTGCCTGGCTCGCCCGTGTGCA
LOC_Os01g13500
OsAffx.23226.1.S1_x_at--378--7672Chr01:7525589..7525609 (21 bp)
GGGATTCAGCTGCATTGGCCGCATC
LOC_Os01g13500
OsAffx.23226.1.S1_x_at--752--9051NONE
TGCATTGGCCGCATCCACTTCAGGG
NONE
OsAffx.23226.1.S1_x_at--913--7691Chr01:7527129..7527153 (25 bp)
GGGTCTACGGATGATGATTATGATA
NONE
OsAffx.23226.1.S1_x_at--661--6291Chr01:7527141..7527165 (25 bp)
GATGATTATGATAAACTTGAGCTCA
NONE
Target Sequence 
ACCAGCTGCTTTTTTCCTCCGTCAGCGGCGATGGCATGGCGATGCGATGCTTCCCCGAGGCCAGGATGTGAGACGGAGAT
GCGGAGGCTGGCGCTCCCCCTGCCGACTCCCGTTCGCCGGCGAGGTCGCCGCCGCGTCCTCTTCGTTGCCTGGCTCGCCC
GTGTGCAGGGGATTCAGCTGCATTGGCCGCATCCACTTCAGGGGGTCTACGGATGATGATTATGATAAACTTGAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23226.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis