Browse Element(s) Details


Os.22269.2.S1_x_at

Description gb:NM_188673.1
DB_XREF= gi:34904429
TID=Os.22269.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1352011/11Auxin response factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein
LOC_Os01g13500OsAffx.23226.1.S1_x_at4/111+7525451..7526938hypothetical protein
LOC_Os01g13510OsAffx.11035.1.S1_at11/111+7540473..7541312hypothetical protein
LOC_Os01g13520Os.22269.1.S1_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13520Os.22269.2.S1_x_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13530Os.24968.1.S1_at10/111+7554140..7557427expressed protein
LOC_Os01g13530Os.24968.2.S1_at2/111+7554140..7557427expressed protein
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22269.2.S1_x_at--560--10871Chr01:7546549..7546573 (25 bp)
TTGGCCAGGCGAGCATCCAGGATAT
LOC_Os01g13520
Os.22269.2.S1_x_at--98--6871Chr01:7546592..7546616 (25 bp)
GTTTGTCAGAATCCGCTAGTACTTG
LOC_Os01g13520
Os.22269.2.S1_x_at--255--4171Chr01:7546660..7546684 (25 bp)
CCCTACCTTGTCAGAGATTTCTCAG
LOC_Os01g13520
Os.22269.2.S1_x_at--1033--1471Chr01:7546715..7546739 (25 bp)
AGAATTGCTACATGGCCTGCACGTT
LOC_Os01g13520
Os.22269.2.S1_x_at--680--9031Chr01:7546732..7546756 (25 bp)
TGCACGTTCTGCTTACCAAGCTGAG
LOC_Os01g13520
Os.22269.2.S1_x_at--1078--1591Chr01:7546750..7546774 (25 bp)
AGCTGAGGAGCCCACTTCCAAGTTG
LOC_Os01g13520
Os.22269.2.S1_x_at--276--10671Chr01:7546765..7546789 (25 bp)
TTCCAAGTTGTCTTCGAACACCGCT
LOC_Os01g13520
Os.22269.2.S1_x_at--140--4791Chr01:7546787..7546811 (25 bp)
GCTGCCTGTGGTTACCGAACTGAAG
LOC_Os01g13520
Os.22269.2.S1_x_at--105--5351Chr01:7546811..7546835 (25 bp)
GAAGTTGCTCCAAATGCGTCCAAGG
LOC_Os01g13520
Os.22269.2.S1_x_at--286--5571Chr01:7548168..7548192 (25 bp)
GAAAGATTGTGCTCTATCCCATTGA
LOC_Os01g13520
Os.22269.2.S1_x_at--574--1451Chr01:7548201..7548225 (25 bp)
AGAAGATCGAGCCTCACCCGAAGTT
LOC_Os01g13520
Target Sequence 
TTGGCCAGGCGAGCATCCAGGATATGGTGCCGTGAGTAGTTCAGTTTGTCAGAATCCGCTAGTACTTGAAAGTTGGTTGA
AGGATTTCAACTCTTCAAACAAGGGTGTCTCCCCTACCTTGTCAGAGATTTCTCAGAAAATTTTTCAGGTTACCAGCAAT
GAAGCAAGAATTGCTACATGGCCTGCACGTTCTGCTTACCAAGCTGAGGAGCCCACTTCCAAGTTGTCTTCGAACACCGC
TGCCTGTGGTTACCGAACTGAAGAAGTTGCTCCAAATGCGTCCAAGGTTCAAATGCATGGAAATGCTGTGGGCAGAGCTG
TGGATCTAGCTAATCTAGACGGATATGAGCAACTGATGAATGAGCTGGAAGAGATGTTCAATATAAAGGACCTCAAACAA
AAATGGAAGGTGGCTTTCACTGATGATGAGGGTGACACAATGGAAGTTGGAGATGATCCTTGGCTGGAATTTTGCCAGAT
GGTCAGAAAGATTGTGCTCTATCCCATTGAAGACGAGAAGAAGATCGAGCCTCACCCGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22269.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis