Browse Element(s) Details


Os.3838.1.S1_at

Description gb:AK067319.1
DB_XREF= gi:32977337
TID=Os.3838.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106K21, full insert sequence.
FL= gb:AK061701.1 gb:AK067319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1354011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13520Os.22269.1.S1_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13520Os.22269.2.S1_x_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13530Os.24968.1.S1_at10/111+7554140..7557427expressed protein
LOC_Os01g13530Os.24968.2.S1_at2/111+7554140..7557427expressed protein
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed
LOC_Os01g13560Os.22846.1.A1_at9/111+7584993..7586435plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g13570Os.27709.1.S1_a_at11/111+7587215..7589545phosphoglycerate mutase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3838.1.S1_at--401--5751Chr01:7573051..7573075 (25 bp)
GACGGTGACCATAAAGGCTAGCTTT
LOC_Os01g13540
Os.3838.1.S1_at--21--6711Chr01:7573107..7573131 (25 bp)
GTTCCGGTAGCGTTACTGCATTGAA
LOC_Os01g13540
Os.3838.1.S1_at--981--1191Chr01:7573212..7573236 (25 bp)
AGTTAGCATGCAACGCGGACTTGGA
LOC_Os01g13540
Os.3838.1.S1_at--604--8551Chr01:7573245..7573269 (25 bp)
TGGAGATCTCTGGTAGCCATGTCAT
LOC_Os01g13540
Os.3838.1.S1_at--358--731Chr01:7573287..7573311 (25 bp)
ATGTTGCGGCACACCTTGGTAGTTC
LOC_Os01g13540
Os.3838.1.S1_at--929--3131Chr01:7573332..7573356 (25 bp)
AATTCAGGTCAGCATTTTCGTTCCA
LOC_Os01g13540
Os.3838.1.S1_at--520--171Chr01:7573345..7573369 (25 bp)
ATTTTCGTTCCATGGGTGCATACAT
LOC_Os01g13540
Os.3838.1.S1_at--716--2111Chr01:7573366..7573390 (25 bp)
ACATGTTCTGCGAGGTCAGTCTCAC
LOC_Os01g13540
Os.3838.1.S1_at--620--3451Chr01:7573382..7573406 (25 bp)
CAGTCTCACCTGTTGTTAATCTAGT
LOC_Os01g13540
Os.3838.1.S1_at--866--9911Chr01:7573506..7573530 (25 bp)
TACTGTACATATTAAGCCCTTGGTG
LOC_Os01g13540
Os.3838.1.S1_at--799--4531Chr01:7573521..7573545 (25 bp)
GCCCTTGGTGCTGGAAAATTCTGAT
LOC_Os01g13540
Target Sequence 
GACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTGTCAGGTTCCNCTTCCCATGTTCCGGTAGCGTTACTGCATTGA
AAGATGAAGTAGCCAAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTG
AAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGT
TGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATG
TTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATT
GTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAGCCCTTGGTG
CTGGAAAATTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis