Browse Element(s) Details


Os.27709.1.S1_a_at

Description gb:AK060943.1
DB_XREF= gi:32970961
TID=Os.27709.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-D10, full insert sequence.
FL= gb:AK068739.1 gb:AK060943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1357011/11phosphoglycerate mutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed
LOC_Os01g13560Os.22846.1.A1_at9/111+7584993..7586435plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g13570Os.27709.1.S1_a_at11/111+7587215..7589545phosphoglycerate mutase family protein, expressed
LOC_Os01g13590OsAffx.10815.1.S1_at7/111+7599631..7600150Isoflavone reductase homolog IRL, putative
LOC_Os01g13600OsAffx.10815.1.S1_at4/111+7602164..7603347NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27709.1.S1_a_at--979--8271Chr01:7587959..7587983 (25 bp)
GGCATATACCCAGTTCGGAAGTTAT
LOC_Os01g13570
Os.27709.1.S1_a_at--58--731Chr01:7587800..7587824 (25 bp)
ATGTTGGTCGTTACTCACAAATCTA
LOC_Os01g13570
Os.27709.1.S1_a_at--765--2191Chr01:7587784..7587808 (25 bp)
ACAAATCTATTTTGCGCGCACTCAT
LOC_Os01g13570
Os.27709.1.S1_a_at--998--3791Chr01:7587573..7587763 (25 bp)
CTCCTGAGAGGTTTCGTTCCATTGA
LOC_Os01g13570
Os.27709.1.S1_a_at--642--8491Chr01:7587536..7587560 (25 bp)
TGGCATGTGCGTCTTCACTGTAAAC
LOC_Os01g13570
Os.27709.1.S1_a_at--223--8051Chr01:7587505..7587529 (25 bp)
GGAGAGGCTATGCTTCAAGCCCTTA
LOC_Os01g13570
Os.27709.1.S1_a_at--321--3251Chr01:7587490..7587514 (25 bp)
CAAGCCCTTAACATGACAGCACACA
LOC_Os01g13570
Os.27709.1.S1_a_at--1064--6872Chr04:28916541..28916771 (25 bp)
GTATTAGTTATCTGTTCTTCTCTTT
NONE
Os.27709.1.S1_a_at--955--7711Chr01:7587411..7587435 (25 bp)
GGGTGTCTGCATTTCTGTCAAGTAT
LOC_Os01g13570
Os.27709.1.S1_a_at--764--1471Chr01:7587383..7587407 (25 bp)
AGCAGTTTAGCACACCCTGATTAGA
LOC_Os01g13570
Os.27709.1.S1_a_at--422--3731Chr01:7587260..7587284 (25 bp)
CTACTCAACTAGTGATGCGCTGAAA
LOC_Os01g13570
Target Sequence 
GGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATAT
GTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCA
TTGATGTGAACAATGGTGGCATGTGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACA
GCACACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGGGTGTCTGCATTTCTGTC
AAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCATTCTCGATGAAATAGCATGGATAGGTCACACAAATCG
ACCCTCTCTGATATAGTTGTTGATGTGAATATAAACTGTTTACAAGGATCAACTACTCAACTAGTGATGCGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27709.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis