Browse Element(s) Details


Os.3839.1.S1_at

Description gb:CR280155
DB_XREF= gi:44666721
DB_XREF=CR280155
CLONE=p632b11p3
TID=Os.3839.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.3839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1355011/11Glycosyl hydrolase family 14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13530Os.24968.1.S1_at10/111+7554140..7557427expressed protein
LOC_Os01g13530Os.24968.2.S1_at2/111+7554140..7557427expressed protein
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed
LOC_Os01g13560Os.22846.1.A1_at9/111+7584993..7586435plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g13570Os.27709.1.S1_a_at11/111+7587215..7589545phosphoglycerate mutase family protein, expressed
LOC_Os01g13590OsAffx.10815.1.S1_at7/111+7599631..7600150Isoflavone reductase homolog IRL, putative
LOC_Os01g13600OsAffx.10815.1.S1_at4/111+7602164..7603347NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009570cellular_componentchloroplast stroma
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3839.1.S1_at--104--491Chr01:7575468..7575492 (25 bp)
ATCGGAACTGACTGCTGGTTACTAC
LOC_Os01g13550
Os.3839.1.S1_at--932--6771Chr01:7575424..7575448 (25 bp)
GTTATCTTCCTATCACCCAAATGTT
LOC_Os01g13550
Os.3839.1.S1_at--840--1451Chr01:7575321..7575345 (25 bp)
AGAAGGTACTCTCCGGCAACTTATG
LOC_Os01g13550
Os.3839.1.S1_at--231--8611Chr01:7575298..7575322 (25 bp)
TGGTCGCCGCCAAGATGTGCAATCT
LOC_Os01g13550
Os.3839.1.S1_at--360--7351Chr01:7575282..7575306 (25 bp)
GTGCAATCTACCTCTGAACGGCGAA
LOC_Os01g13550
Os.3839.1.S1_at--891--2371Chr01:7575258..7575282 (25 bp)
AAACTCCGTGACAAGGCTCGACGAT
LOC_Os01g13550
Os.3839.1.S1_at--880--1051Chr01:7575180..7575204 (25 bp)
AGGGACATCTTTCTCCTTCAACTAT
LOC_Os01g13550
Os.3839.1.S1_at--933--1371Chr01:7575142..7575166 (25 bp)
AGAGCCTGTTTGAGTTTCACAACTG
LOC_Os01g13550
Os.3839.1.S1_at--677--2491Chr01:7575116..7575140 (25 bp)
AACAGGTTCACCAAGTTCGTCAGGC
LOC_Os01g13550
Os.3839.1.S1_at--701--7971Chr01:7575084..7575108 (25 bp)
GGATGCCAGGACATTTCTAGCCAGG
LOC_Os01g13550
Os.3839.1.S1_at--878--1671Chr01:7575002..7575026 (25 bp)
AGCCGGGCCTGTGCATAGACATGAA
LOC_Os01g13550
Target Sequence 
ATCGGAACTGACTGCTGGTTACTACAACACATTGTTGAGGAACGGTTATCTTCCTATCACCCAAATGTTTGCTAGATACA
AGGCTGCCTTGTGCTGCAGTTGCTTTGACCTGAGGGATGAGGAGAGAAATAACTCCAAGAGCAGCCCAGAAGGTACTCTC
CGGCAACTTATGGTCGCCGCCAAGATGTGCAATCTACCTCTGAACGGCGAAAACTCCGTGACAAGGCTCGACGATACGTC
GCTGAATCAAGTCATCAGAAGCTCAAGGCTCTACTCAGGTGGCACCTCAGGGACATCTTTCTCCTTCAACTATGTCAGNA
TGAACAAGAGCCTGTTTGAGTTTCACAACTGGAACAGGTTCACCAAGTTCGTCAGGCAGATGTCGGATGCCAGGACATTT
CTAGCCAGGCTCGAGTTCAGGAGAGGGCAGCATTACCTCTCCTCGATGTCGGTTGTCTGGGTCGTCAGCCGGGCCTGTGC
ATAGACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis