Browse Element(s) Details


Os.24968.2.S1_at

Description gb:NM_188674.1
DB_XREF= gi:34904431
TID=Os.24968.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g135302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13510OsAffx.11035.1.S1_at11/111+7540473..7541312hypothetical protein
LOC_Os01g13520Os.22269.1.S1_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13520Os.22269.2.S1_x_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13530Os.24968.1.S1_at10/111+7554140..7557427expressed protein
LOC_Os01g13530Os.24968.2.S1_at2/111+7554140..7557427expressed protein
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24968.2.S1_at--44--311NONE
ATACCACAGGCGCACAGATATAGTG
NONE
Os.24968.2.S1_at--870--2251Chr01:7556651..7556675 (25 bp)
AAATCATCAGCACACAAACAAAAGG
LOC_Os01g13530
Os.24968.2.S1_at--647--911Chr01:7556673..7556695 (23 bp)
AGGCATGTTATCTTCACTAGATGAA
LOC_Os01g13530
Os.24968.2.S1_at--624--171Chr01:7557427..7557446 (20 bp)
ATTTTTACTCGTATGCTCTCCAAGT
NONE
Os.24968.2.S1_at--453--2851Chr01:7557443..7557467 (25 bp)
AAGTCTCCATTTCTCCTGATACCAA
NONE
Os.24968.2.S1_at--780--3851NONE
CTGATACCAAGGAACCATGTCGTTT
NONE
Os.24968.2.S1_at--116--2651Chr01:7558289..7558313 (25 bp)
AACCATGTCGTTTGGCTGTCAGCAA
NONE
Os.24968.2.S1_at--719--10231Chr01:7558299..7558323 (25 bp)
TTTGGCTGTCAGCAAACTCTCAGAA
NONE
Os.24968.2.S1_at--931--2531Chr01:7558313..7558337 (25 bp)
AACTCTCAGAAGCATGCCAATCCAA
NONE
Os.24968.2.S1_at--613--10651Chr01:7558340..7558364 (25 bp)
TTCCAAACCCTGATATAGTATTATG
NONE
Os.24968.2.S1_at--465--6551Chr01:7558371..7558395 (25 bp)
GATTATATCCTATGCTGCTATACAA
NONE
Target Sequence 
ATACCACAGGCGCACAGATATAGTGGAATCAGCCATTCATCCAGTTTCAGAACCTCCACGGTATAGCAGGCAACATATGA
GCCGTAAAATGCACAAGTCACAATCTATCTCTACGCCAGTTGGCAGGCAATCTACAATGAGGAGCGCGCGTTCACCATCT
CCTTCAGCTCGTGGCACACATCATCGATCACGGTCCTTGTCACCTTCTCGAAAAGCACGAGCTAAATCCCCATCTCCCCA
AATCATCAGCACACAAACAAAAGGCATGTTATCTTCACTAGATGAAACAAGAGCAGGTTCACCAATACCGAATTCCAATC
CCCTTGCACGATCTGCCACGGTTGCAAGAAGGCCACCTGTTCATCCAAAGCATTTTTACTCGTATGCTCTCCAAGTCTCC
ATTTCTCCTGATACCAAGGAACCATGTCGTTTGGCTGTCAGCAAACTCTCAGAAGCATGCCAATCCAAAGTTCCAAACCC
TGATATAGTATTATGGTATATGATTATATCCTATGCTGCTATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24968.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis