Browse Element(s) Details


Os.22846.1.A1_at

Description gb:AK062426.1
DB_XREF= gi:32972444
TID=Os.22846.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H04, full insert sequence.
FL= gb:AK062426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g135609/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13540Os.3838.1.S1_at11/111+7568038..7573616RWP-RK domain containing protein, expressed
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed
LOC_Os01g13560Os.22846.1.A1_at9/111+7584993..7586435plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g13570Os.27709.1.S1_a_at11/111+7587215..7589545phosphoglycerate mutase family protein, expressed
LOC_Os01g13590OsAffx.10815.1.S1_at7/111+7599631..7600150Isoflavone reductase homolog IRL, putative
LOC_Os01g13600OsAffx.10815.1.S1_at4/111+7602164..7603347NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22846.1.A1_at--1026--8551Chr01:7585852..7585876 (25 bp)
TGGATCGCGATCTGTGTCCAGGTGC
LOC_Os01g13560
Os.22846.1.A1_at--774--9251Chr01:7585931..7585955 (25 bp)
TCCTCTACTACCTCATGCTCATGTA
LOC_Os01g13560
Os.22846.1.A1_at--417--631Chr01:7585945..7585969 (25 bp)
ATGCTCATGTACTCCATTTACACAC
LOC_Os01g13560
Os.22846.1.A1_at--595--731Chr01:7585975..7585999 (25 bp)
ATGTTCCCATGAGCATCTCTACTAC
LOC_Os01g13560
Os.22846.1.A1_at--685--4971Chr01:7585987..7586011 (25 bp)
GCATCTCTACTACTAGCTTTTTAGC
LOC_Os01g13560
Os.22846.1.A1_at--519--10451Chr01:7586043..7586067 (25 bp)
TTAGAGTCAGTAGTACTCTCTCCGT
LOC_Os01g13560
Os.22846.1.A1_at--287--2451NONE
AAAATGCCACGGATGTCTGTGCCTC
NONE
Os.22846.1.A1_at--703--6271NONE
GATGTCTGTGCCTCTTCAAGAATGG
NONE
Os.22846.1.A1_at--341--2731Chr01:7586333..7586357 (25 bp)
AAGCACATAGTTTCTGTATACAGCT
LOC_Os01g13560
Os.22846.1.A1_at--402--6391Chr01:7586371..7586395 (25 bp)
GATCGCAACTGCTACTATTATGTAA
LOC_Os01g13560
Os.22846.1.A1_at--394--1211Chr01:7586410..7586434 (25 bp)
AGTTTTGTGTTGTGGCTTCTTAATC
LOC_Os01g13560
Target Sequence 
TGGATCGCGATCTGTGTCCAGGTGCCGCTCTTCTGCGACCGCGTCAGGTCGGCTCTCGTCGCCGGCTCCGCCACCATCGT
CCTCTACTACCTCATGCTCATGTACTCCATTTACACACTCCCCATGTTCCCATGAGCATCTCTACTACTAGCTTTTTAGC
TTTTTAGAGTAGTAGAGGTGTCGTTCTAAATTTAGAGTCAGTAGTACTCTCTCCGTTCTAAAATAAATTAATTTTTATTT
ATGTACAGAATTATGTACAGAATTTTATTTATTTTGAGATAGAGTAGGTGCTTGTAAGTGAGATTANCAGCCTNTTTTTN
TAAGAGGTTTCTTATTATTCTTGGAGAGTTATATAGCCGTTGGATAAAAATGCCACGGATGTCTGTGCCTCTTCAAGAAT
GGGAGAAAATCTCTTATTTTTTTTATATGTTTTCTTGTAAAGGCTTTTCTATAGTAGTGATGATCAAACGTTATAGTATG
AAAGCACATAGTTTCTGTATACAGCTAGNCTAGTGATATATGATCGCAACTGCTACTATTATGTAAACAGAAAAATTGTA
AGTTTTGTGTTGTGGCTTCTTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22846.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis