Browse Element(s) Details


Os.24496.1.S1_at

Description gb:AK065569.1
DB_XREF= gi:32975587
TID=Os.24496.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026L08, full insert sequence.
FL= gb:AK065569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1349011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13480Os.36648.1.S1_x_at10/111+7514014..7515543Glutaredoxin family protein, expressed
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein
LOC_Os01g13500OsAffx.23226.1.S1_x_at4/111+7525451..7526938hypothetical protein
LOC_Os01g13510OsAffx.11035.1.S1_at11/111+7540473..7541312hypothetical protein
LOC_Os01g13520Os.22269.1.S1_at11/111+7543747..7548677Auxin response factor family protein, expressed
LOC_Os01g13520Os.22269.2.S1_x_at11/111+7543747..7548677Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24496.1.S1_at--449--4271Chr01:7517151..7517175 (25 bp)
CCTGGCTCGCAGTGTGCAAGGGATT
LOC_Os01g13490
Os.24496.1.S1_at--214--6951Chr01:7520853..7520877 (25 bp)
GTAGTTTCTCCTTATGCATGACGCA
LOC_Os01g13490
Os.24496.1.S1_at--477--6311Chr01:7520894..7520918 (25 bp)
GATGACCATGTTATCTGCCAGGATT
LOC_Os01g13490
Os.24496.1.S1_at--444--9991Chr01:7520938..7520962 (25 bp)
TAGCCTTACAGGCACTCAGCGGCAA
LOC_Os01g13490
Os.24496.1.S1_at--1122--1591Chr01:7520955..7520979 (25 bp)
AGCGGCAACTGTTAGGGACTTCCCT
LOC_Os01g13490
Os.24496.1.S1_at--472--10071Chr01:7520967..7520991 (25 bp)
TAGGGACTTCCCTGTCATATGACAT
LOC_Os01g13490
Os.24496.1.S1_at--425--671Chr01:7521001..7521025 (25 bp)
ATGAAGCCCAATGGTCTTGCCTAGA
LOC_Os01g13490
Os.24496.1.S1_at--259--7131Chr01:7521014..7521038 (25 bp)
GTCTTGCCTAGACTTCATAAGTTTG
LOC_Os01g13490
Os.24496.1.S1_at--875--6651Chr01:7521053..7521077 (25 bp)
GTTGAGGACATCTGTAAACCCAGTA
LOC_Os01g13490
Os.24496.1.S1_at--884--5591Chr01:7521118..7521142 (25 bp)
GAAATTTTGCCTCATTGATCTTGTT
LOC_Os01g13490
Os.24496.1.S1_at--404--3291Chr01:7521210..7521234 (25 bp)
CAAAGCAAGTGGTCTCTGTTCTGTT
LOC_Os01g13490
Target Sequence 
CCTGGCTCGCAGTGTGCAAGGGATTCAGCTGCATTGGCCGGTAAATANGTAAAAAGGGTGCTAGGTTTCAAGACAAAAAA
AGTGTGGAGATTATTTATGCAGTAGTTTCTCCTTATGCATGACGCAATGGAAATTGGAAAGTGATGACCATGTTATCTGC
CAGGATTACAAAGTAAAGGCNAATGTTAGCCTTACAGGCACTCAGCGGCAACTGTTAGGGACTTCCCTGTCATATGACAT
CTTTGAAAAATGAAGCCCAATGGTCTTGCCTAGACTTCATAAGTTTGAATTTGTTGGTTTGGTTGAGGACATCTGTAAAC
CCAGTAGNGTAATTTTTTCGTTCATTTACTATACAAAGCAANTGTTGAAATTTTGCCTCATTGATCTTGTTNCCCCCCTA
TGTTGTTCAGGACAGACCCAGATATATNTGAATCCTACTGTCATTACCATNCGCAATACAAAGCAAGTGGTCTCTGTTCT
GTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis