Browse Element(s) Details

Os.45983.1.S1_x_at

Description

gb:NM_188664.1
DB_XREF= gi:34904411
TID=Os.45983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g13460	11/11	Helix-loop-helix DNA-binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g13420	Os.27593.1.S1_at	11/11	1	+	7467512..7469531	SOUL heme-binding protein, expressed
LOC_Os01g13430	Os.3822.2.S2_x_at	11/11	1	+	7474480..7479616	CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430	Os.3822.2.S1_x_at	11/11	1	+	7474480..7479616	CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430	Os.3822.1.S1_at	11/11	1	+	7474480..7479616	CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440	Os.43374.1.S1_at	11/11	1	+	7481712..7482527	expressed protein
LOC_Os01g13450	OsAffx.11034.2.S1_s_at	11/11	1	+	7486035..7486751	hypothetical protein
LOC_Os01g13460	Os.3825.1.S1_at	11/11	1	+	7491859..7495193	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460	Os.45983.1.S1_x_at	11/11	1	+	7491859..7495193	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470	Os.3828.1.S1_at	11/11	1	+	7503057..7508570	KH domain containing protein, expressed
LOC_Os01g13470	Os.3828.2.S1_x_at	11/11	1	+	7503057..7508570	KH domain containing protein, expressed
LOC_Os01g13480	Os.36648.1.S1_x_at	10/11	1	+	7514014..7515543	Glutaredoxin family protein, expressed
LOC_Os01g13490	Os.24496.1.S1_at	11/11	1	+	7516419..7521235	expressed protein
LOC_Os01g13490	OsAffx.23226.1.S1_x_at	1/11	1	+	7516419..7521235	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009269	biological_process	response to desiccation
GO:0009611	biological_process	response to wounding
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009867	biological_process	jasmonic acid mediated signaling pathway
GO:0045449	biological_process	regulation of transcription
GO:0045941	biological_process	positive regulation of transcription
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0016563	molecular_function	transcriptional activator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.45983.1.S1_x_at--1029--763	1	Chr01:7492703..7492727 (25 bp)	GGGAGAAGCTCAACCAGCGATTCTA	LOC_Os01g13460
Os.45983.1.S1_x_at--113--463	1	Chr01:7492687..7492711 (25 bp)	GCGATTCTATGCACTGAGAGCCGTT	LOC_Os01g13460
Os.45983.1.S1_x_at--1036--599	1	Chr01:7492672..7492696 (25 bp)	GAGAGCCGTTGTACCCAATATATCA	LOC_Os01g13460
Os.45983.1.S1_x_at--1065--229	1	Chr01:7492646..7492670 (25 bp)	AAATGGACAAGGCATCCCTCCTTGG	LOC_Os01g13460
Os.45983.1.S1_x_at--552--581	1	Chr01:7492620..7492644 (25 bp)	GACGCCATAACATACATCACTGACC	LOC_Os01g13460
Os.45983.1.S1_x_at--523--1055	1	Chr01:7492475..7492499 (25 bp)	TTCTAGTCCGAGTGATGAGCCCCAT	LOC_Os01g13460
Os.45983.1.S1_x_at--84--109	1	Chr01:7492434..7492458 (25 bp)	AGGGCCATCTTCCAAGCTTTCGAAG	LOC_Os01g13460
Os.45983.1.S1_x_at--136--11	1	Chr01:7492352..7492376 (25 bp)	ATTCTTTCATCATCAAGTGCCCTGG	LOC_Os01g13460
Os.45983.1.S1_x_at--884--693	1	Chr01:7492237..7492261 (25 bp)	GTAGAGGCAGCTTTACTTCGTTCGC	LOC_Os01g13460
Os.45983.1.S1_x_at--525--989	1	Chr01:7492224..7492248 (25 bp)	TACTTCGTTCGCTGGTTGCAGACAA	LOC_Os01g13460
Os.45983.1.S1_x_at--378--271	1	Chr01:7492194..7492218 (25 bp)	AAGCAGTCGGTTGGACGGACACCCA	LOC_Os01g13460

Target Sequence

GGGAGAAGCTCAACCAGCGATTCTATGCACTGAGAGCCGTTGTACCCAATATATCAAAAATGGACAAGGCATCCCTCCTT
GGTGACGCCATAACATACATCACTGACCTACAGAAGAAGCTCAAAGAGATGGAGGTAGAGCGAGAAAGGCTTATCGAGTC
TGGAATGATCGATCCGAGGGATCGGACGCCTCGACCTGAGGTGGACATTCAGGTGGTTCAGGATGAGGTTCTAGTCCGAG
TGATGAGCCCCATGGAAAGCCACCCTGTCAGGGCCATCTTCCAAGCTTTCGAAGAGGCAGAAGTCCATGCAGGGGAGTCG
AAGATCACAAGCAACAACGGCACGGCCGTGCATTCTTTCATCATCAAGTGCCCTGGCGCCGAACAGCAAACGAGGGAGAA
GGGTAGAATCAGTTGGGGAGTGGGCGCCACCGGTAGAGGCAGCTTTACTTCGTTCGCTGGTTGCAGACAAGCAGCAAGCA
GTCGGTTGGACGGACACCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis