Browse Element(s) Details


OsAffx.11034.2.S1_s_at

Description tigr:9629.m01319
TID=OsAffx.11034.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1345011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11034.2.S1_s_at--460--5771Chr01:7486610..7486634 (25 bp)
GACGATGTCGTGGTCCAAGATGGCT
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--53--4391Chr01:7486596..7486620 (25 bp)
CCAAGATGGCTCTAGCATGGGCGGT
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--560--8411Chr01:7486455..7486479 (25 bp)
GGCCCTGAGTCGTTGTCGTGCAGCA
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--860--9351Chr01:7486392..7486416 (25 bp)
TCGCAGTGGCGCTTCGGGTCCCAGT
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--445--9011Chr01:7486333..7486357 (25 bp)
TGAATCGCACCGCTGATGGCATGGA
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--1000--6231Chr01:7486319..7486343 (25 bp)
GATGGCATGGAGATACCCAAGTTCC
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--502--9951Chr01:7486306..7486330 (25 bp)
TACCCAAGTTCCATCAAGCCATAGT
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--631--2651Chr01:7486291..7486315 (25 bp)
AAGCCATAGTCACCGATCAGCGCTG
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--261--1711Chr01:7486187..7486211 (25 bp)
ACCACAGGGACTCCTCGGAAGTTGA
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--671--1071Chr01:7486182..7486206 (25 bp)
AGGGACTCCTCGGAAGTTGACTGCG
LOC_Os01g13450
OsAffx.11034.2.S1_s_at--629--10751Chr01:7486166..7486190 (25 bp)
TTGACTGCGATCAGGAGTGCCGCCG
LOC_Os01g13450
Target Sequence 
GACGATGTCGTGGTCCAAGATGGCTCTAGCATGGGCGGTGGTGTCCCCGGGACGGCAAGTCGGTGGGGAGCCATGAGCCT
CTCCTCCGACCTTACCTTCTTGCCTCTTCCGGCGGTCATGGCGGTGTCAGCGGCAGGGATAGGGCTGACGGGAGGGGCCC
TGAGTCGTTGTCGTGCAGCAGCGGCAGGGGTAGGGCCGGGCGGCGTGCAGAGTTGTCGTCGCAGTGGCGCTTCGGGTCCC
AGTCCCCTCTCCTCCACGAATCCCGCCGCCGCCACCATGAATCGCACCGCTGATGGCATGGAGATACCCAAGTTCCATCA
AGCCATAGTCACCGATCAGCGCTGCTCCACCCTCGACTTGCTCCACGTGATCCTCCGCCCCTCCCCTATCCAACCCTCCT
CGCGAATCGTGACTCCTCCTCCCACCACAGGGACTCCTCGGAAGTTGACTGCGATCAGGAGTGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11034.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis