Browse Element(s) Details


Os.19005.3.S1_x_at

Description gb:NM_188657.1
DB_XREF= gi:34904397
TID=Os.19005.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1340411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19005.3.S1_x_at--809--911Chr01:7461932..7461956 (25 bp)
AGGCTCCACCTCTGACGCTGTCGAT
LOC_Os01g13404
Os.19005.3.S1_x_at--928--1751Chr01:7461925..7461949 (25 bp)
ACCTCTGACGCTGTCGATATTCGAG
LOC_Os01g13404
Os.19005.3.S1_x_at--46--5811Chr01:7461919..7461943 (25 bp)
GACGCTGTCGATATTCGAGTTCAAC
LOC_Os01g13404
Os.19005.3.S1_x_at--685--6511Chr01:7461549..7461934 (25 bp)
GATATTCGAGTTCAACAGTGATGCA
LOC_Os01g13404
Os.19005.3.S1_x_at--1017--6751Chr01:7461757..7461925 (25 bp)
GTTCAACAGTGATGCAGGACGAGCT
LOC_Os01g13404
Os.19005.3.S1_x_at--391--1611Chr01:7461736..7461760 (25 bp)
AGCTGCAGAAGCTGGCGCTCAAGGT
LOC_Os01g13404
Os.19005.3.S1_x_at--218--5411Chr01:7461729..7461753 (25 bp)
GAAGCTGGCGCTCAAGGTGAACCAC
LOC_Os01g13404
Os.19005.3.S1_x_at--835--8451Chr01:7461724..7461748 (25 bp)
TGGCGCTCAAGGTGAACCACCACGA
LOC_Os01g13404
Os.19005.3.S1_x_at--880--7351Chr01:7461713..7461737 (25 bp)
GTGAACCACCACGAGGAGAACATCA
LOC_Os01g13404
Os.19005.3.S1_x_at--388--1711Chr01:7461706..7461730 (25 bp)
ACCACGAGGAGAACATCAGGTTTCT
LOC_Os01g13404
Os.19005.3.S1_x_at--214--1431Chr01:7461697..7461721 (25 bp)
AGAACATCAGGTTTCTCAAGTCGGA
LOC_Os01g13404
Target Sequence 
AGGCTCCACCTCTGACGCTGTCGATATTCGAGTTCAACAGTGATGCAGGACGAGCTGCAGAAGCTGGCGCTCAAGGTGAA
CCACCACGAGGAGAACATCAGGTTTCTCAAGTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19005.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis