Browse Element(s) Details


Os.43374.1.S1_at

Description gb:AK121404.1
DB_XREF= gi:37991027
TID=Os.43374.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132B02, full insert sequence.
FL= gb:AK121404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1344011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43374.1.S1_at--322--1011Chr01:7481962..7481986 (25 bp)
AGGATTGCACCTCCAATGTTGAGAT
LOC_Os01g13440
Os.43374.1.S1_at--198--7391Chr01:7481995..7482019 (25 bp)
GTGAGACATGCTCCTACATCAGAAA
LOC_Os01g13440
Os.43374.1.S1_at--552--7671Chr01:7482096..7482120 (25 bp)
GGGATTGCTGCTACTATGCTCGACA
LOC_Os01g13440
Os.43374.1.S1_at--304--5611Chr01:7482145..7482169 (25 bp)
GACAAGTTGCCGCAGTTTCCATTGC
LOC_Os01g13440
Os.43374.1.S1_at--1014--71Chr01:7482165..7482189 (25 bp)
ATTGCCTTCATGCTTGCTGCTGATG
LOC_Os01g13440
Os.43374.1.S1_at--599--551Chr01:7482200..7482224 (25 bp)
ATCCGCACCTGCTGACAAGTTTAGA
LOC_Os01g13440
Os.43374.1.S1_at--371--6131Chr01:7482343..7482367 (25 bp)
GAGTGGCATCACGATACTTCATGTA
LOC_Os01g13440
Os.43374.1.S1_at--1069--9871Chr01:7482357..7482381 (25 bp)
TACTTCATGTAATAGCCGGGTTTTT
LOC_Os01g13440
Os.43374.1.S1_at--1017--7871Chr01:7482375..7482399 (25 bp)
GGTTTTTCCCTATAGTCTTAGTCAT
LOC_Os01g13440
Os.43374.1.S1_at--395--3015Chr04:29871214..29871234 (21 bp)
AATGACTTGGTCACACTGGCTCGAA
NONE
Os.43374.1.S1_at--927--9351Chr01:7482423..7482447 (25 bp)
TCGAAGCGGCGTTGATCGAGCCATA
LOC_Os01g13440
Target Sequence 
AGGATTGCACCTCCAATGTTGAGATGTGCATAAGTGAGACATGCTCCTACATCAGAAAAGCCCTCGATGGTGTTGTTGAT
GCTGCCCCACCAGCAAAACAGGCGGAAACTAAGGAGGCCACGGCCAAGATGGCTGGGATTGCTGCTACTATGCTCGACAC
AGCCATGGCTTCAGGAGAAAAGAGACAAGTTGCCGCAGTTTCCATTGCCTTCATGCTTGCTGCTGATGCGATTGACGCAT
CCGCACCTGCTGACAAGTTTAGAGTAATGGATGAAACATTCAAAGCAGCCGCTTCTCCTATCGCTTGAGCNAGCAACACC
TCGTCTTATCCATCCATCAATAAAATTAGCATATGCTACCACAACCACCACCAGATGTACTGAGTGGCATCACGATACTT
CATGTAATAGCCGGGTTTTTCCCTATAGTCTTAGTCATGCTAATGACTTGGTCACACTGGCTCGAAGCGGCGTTGATCGA
GCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis