Browse Element(s) Details


OsAffx.11033.1.S1_s_at

Description tigr:9629.m01315
TID=OsAffx.11033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1340411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11033.1.S1_s_at--929--1751Chr01:7461925..7461949 (25 bp)
ACCTCTGACGCTGTCGATATTCGAG
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--45--5811Chr01:7461919..7461943 (25 bp)
GACGCTGTCGATATTCGAGTTCAAC
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--101--4731Chr01:7461916..7461940 (25 bp)
GCTGTCGATATTCGAGTTCAACAGT
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--89--1631Chr01:7461727..7461751 (25 bp)
AGCTGGCGCTCAAGGTGAACCACCA
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--310--8351Chr01:7461723..7461747 (25 bp)
GGCGCTCAAGGTGAACCACCACGAG
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--779--1711Chr01:7461709..7461733 (25 bp)
ACCACCACGAGGAGAACATCAGGTT
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--366--5491Chr01:7461696..7461720 (25 bp)
GAACATCAGGTTTCTCAAGTCGGAG
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--960--3211Chr01:7461681..7461705 (25 bp)
CAAGTCGGAGCTCAATGCCGTCGAG
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--1001--9431Chr01:7461677..7461701 (25 bp)
TCGGAGCTCAATGCCGTCGAGGACT
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--80--1571Chr01:7461673..7461697 (25 bp)
AGCTCAATGCCGTCGAGGACTCGTG
LOC_Os01g13404
OsAffx.11033.1.S1_s_at--900--591Chr01:7461667..7461691 (25 bp)
ATGCCGTCGAGGACTCGTGCGCTGA
LOC_Os01g13404
Target Sequence 
ACCTCTGACGCTGTCGATATTCGAGTTCAACAGTAAGGTGATGCAGGACGAGCTGCAGAAGCTGGCGCTCAAGGTGAACC
ACCACGAGGAGAACATCAGGTTTCTCAAGTCGGAGCTCAATGCCGTCGAGGACTCGTGCGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11033.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis