Browse Element(s) Details


Os.6809.1.S1_at

Description gb:AK120816.1
DB_XREF= gi:37990439
TID=Os.6809.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014O08, full insert sequence.
FL= gb:AK120816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1337010/11Ubiquitin ligase SINAT3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6809.1.S1_at--721--10791Chr01:7447832..7447856 (25 bp)
TTGTATGCTCCGAGGCAACGCCTTC
LOC_Os01g13370
Os.6809.1.S1_at--33--4071Chr01:7447822..7447846 (25 bp)
CGAGGCAACGCCTTCATGTTGTACC
LOC_Os01g13370
Os.6809.1.S1_at--609--10071Chr01:7447781..7447805 (25 bp)
TAGGAGGGTAGGACGCTCTTGTAAA
LOC_Os01g13370
Os.6809.1.S1_at--919--3571Chr01:7447732..7447756 (25 bp)
CATATCTTACAGGTTGGCTGATCGA
LOC_Os01g13370
Os.6809.1.S1_at--836--7911Chr01:7447721..7447745 (25 bp)
GGTTGGCTGATCGAGCGTTCAAGCT
LOC_Os01g13370
Os.6809.1.S1_at--1135--6751Chr01:7447705..7447729 (25 bp)
GTTCAAGCTCTCTGTTGTCTTCAGT
LOC_Os01g13370
Os.6809.1.S1_at--178--10811Chr01:7447691..7447715 (25 bp)
TTGTCTTCAGTTCGGCTGGATCTGA
LOC_Os01g13370
Os.6809.1.S1_at--980--3891Chr01:7447676..7447700 (25 bp)
CTGGATCTGAAACTGCATTTTTGCT
LOC_Os01g13370
Os.6809.1.S1_at--695--3851Chr01:7447670..7447694 (25 bp)
CTGAAACTGCATTTTTGCTTCCTGT
LOC_Os01g13370
Os.6809.1.S1_at--658--10271Chr01:7447657..7447681 (25 bp)
TTTGCTTCCTGTTATTAAATTGTGA
LOC_Os01g13370
Os.6809.1.S1_at--421--9831Chr01:7447642..7447666 (25 bp)
TAAATTGTGAATTCCATTAGTCCCA
NONE
Target Sequence 
TTGTATGCTCCGAGGCAACGCCTTCATGTTGTACCTTTGCTAAACAAACATTAGGAGGGTAGGACGCTCTTGTAAAGTAA
AATGTGTGTATATGGCACCCCATATCTTACAGGTTGGCTGATCGAGCGTTCAAGCTCTCTGTTGTCTTCAGTTCGGCTGG
ATCTGAAACTGCATTTTTGCTTCCTGTTATTAAATTGTGAATTCCATTAGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis