Browse Element(s) Details


Os.27593.1.S1_at

Description gb:AK059862.1
DB_XREF= gi:32969880
TID=Os.27593.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-C09, full insert sequence.
FL= gb:AK102961.1 gb:AK104591.1 gb:AK059862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1342011/11SOUL heme-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27593.1.S1_at--214--7731Chr01:7469006..7469030 (25 bp)
GGTGGCCAAGCCACTGCATTGCAGT
LOC_Os01g13420
Os.27593.1.S1_at--729--3591Chr01:7469022..7469046 (25 bp)
CATTGCAGTGAGGAGCTTCTCGGGT
LOC_Os01g13420
Os.27593.1.S1_at--1042--4891Chr01:7469036..7469060 (25 bp)
GCTTCTCGGGTTATGCACGGGACAA
LOC_Os01g13420
Os.27593.1.S1_at--627--2051Chr01:7469085..7469109 (25 bp)
ACTTGCGTTGAGTTTGAGCCGGTCA
LOC_Os01g13420
Os.27593.1.S1_at--792--10731Chr01:7469098..7469122 (25 bp)
TTGAGCCGGTCACCATGGGCTAATT
LOC_Os01g13420
Os.27593.1.S1_at--1082--6131Chr01:7469114..7469138 (25 bp)
GGGCTAATTCCACAAACTACCCTAG
LOC_Os01g13420
Os.27593.1.S1_at--37--4571Chr01:7469144..7469168 (25 bp)
GCGCCTACTCAATTGCGCAGTATAA
LOC_Os01g13420
Os.27593.1.S1_at--377--431Chr01:7469182..7469206 (25 bp)
ATCATTGGCCGTCTCAACGAGGTAT
LOC_Os01g13420
Os.27593.1.S1_at--663--7151Chr01:7469226..7469250 (25 bp)
GTCTACTGGTGTTGAGGCATACTAA
LOC_Os01g13420
Os.27593.1.S1_at--688--5311Chr01:7469254..7469278 (25 bp)
GAAGGTTTTACTGTGCACCATCACC
LOC_Os01g13420
Os.27593.1.S1_at--97--6431Chr01:7469489..7469513 (25 bp)
GATCTTGCATGTCATTGTGTGGCTA
LOC_Os01g13420
Target Sequence 
GGTGGCCAAGCCACTGCATTGCAGTGAGGAGCTTCTCGGGTTATGCACGGGACAACAATGTCGTCGAGGAAGCGGAGAAA
CTTGCGTTGAGTTTGAGCCGGTCACCATGGGCTAATTCCACAAACTACCCTAGCAAGAGCGCCTACTCAATTGCGCAGTA
TAACAACCCCTTTCGCATCATTGGCCGTCTCAACGAGGTATGGTTCGATGTTGATTGCAAGTCTACTGGTGTTGAGGCAT
ACTAAAACGAAGGTTTTACTGTGCACCATCACCCCNAAAAAAAAAAAAGGCTTATTGTGTGTTAGTACCACATAAGCCAT
GTACATCTTTGTATATATGTGTTCATGGTGATGAATTCTGATGATAAAGCTGGGGGGTGTTTGTGGTGTGTCAATCCATC
AGTGATGAAATGACACAGCAGATGTCAATTGTAATGATCCACTATGTACTCACATCTTGCAAGCTCGAGTGCTCGATTCA
GACTGATCTTGCATGTCATTGTGTGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis