Browse Element(s) Details


Os.19005.2.S1_at

Description gb:AK064013.1
DB_XREF= gi:32974031
TID=Os.19005.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H02, full insert sequence.
FL= gb:AK064013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1340410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19005.2.S1_at--407--9191Chr01:7458886..7459167 (25 bp)
TGCCTAGGTAATAGGGCAAGCTTAG
LOC_Os01g13404
Os.19005.2.S1_at--560--4211NONE
CCCCACCTGCGAGGAAGATAATAGA
NONE
Os.19005.2.S1_at--10--2491Chr01:7457299..7457323 (25 bp)
AATTGAAGGAACATGCAAACGGGAT
LOC_Os01g13404
Os.19005.2.S1_at--12--5151Chr01:7457285..7457309 (25 bp)
GCAAACGGGATGTACCTTCTCCATT
LOC_Os01g13404
Os.19005.2.S1_at--1041--6971Chr01:7457274..7457298 (25 bp)
GTACCTTCTCCATTAATTTGTTGAA
LOC_Os01g13404
Os.19005.2.S1_at--305--3031Chr01:7457250..7457274 (25 bp)
AATGCGTGTGGTTTCAGAACTTTCC
LOC_Os01g13404
Os.19005.2.S1_at--457--7512Chr12:24379612..24379841 (25 bp)
GTGGTTTCAGAACTTTCCTGCTGGA
NONE
Os.19005.2.S1_at--805--9651Chr01:7457237..7457261 (25 bp)
TCAGAACTTTCCTGCTGGATGATGC
LOC_Os01g13404
Os.19005.2.S1_at--939--4711Chr01:7457224..7457248 (25 bp)
GCTGGATGATGCAAGGAATTTTTGT
LOC_Os01g13404
Os.19005.2.S1_at--1140--5471Chr01:7457196..7457220 (25 bp)
GAACATGGTGTAGAAAGCAGCTTTA
LOC_Os01g13404
Os.19005.2.S1_at--586--5371Chr01:7457163..7457187 (25 bp)
GAAGAAACCCAACTTTGATGAGAAT
LOC_Os01g13404
Target Sequence 
TGCCTAGGTAATAGGGCAAGCTTAGGAATACAATTTCCTGTAACTGCAAATCTTGGGGTCTCAAACTTACCCGTAACTAT
CACTGAACTGGAGGAGCAAGTTAAACATAAGAATTGGGAAAAGGAAAGGCTTCTCGAGGATATAAAAAGACAAGAAGATT
TGTTGAACCAAGTTAAGGATTTGTTCAGCAAGAAAAAGGAACAGTTCATGGCTTATATCACTCAACCAGGAATGTTACAG
AGAGCATCGCAGGCTTCACCGACAATTCCTTCACCAGCTACTCCTGGAAGCAATCCATTTGGATCAAGGCCTCCCCACCT
GCGAGGAAGATAATAGAGCAGGTAGCGAAGAATTGAAGGAACATGCAAACGGGATGTACCTTCTCCATTAATTTGTTGAA
ATGCGTGTGGTTTCAGAACTTTCCTGCTGGATGATGCAAGGAATTTTTGTTTTGAACATGGTGTAGAAAGCAGCTTTATC
ATCAATGAAGAAACCCAACTTTGATGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19005.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis