Browse Element(s) Details


OsAffx.11033.1.S1_at

Description tigr:9629.m01315
TID=OsAffx.11033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1340410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11033.1.S1_at--333--4751NONE
GCTGACCTGGGCATTGGCCAGATGT
NONE
OsAffx.11033.1.S1_at--1029--3851Chr01:7461364..7461670 (25 bp)
CTGACCTGGGCATTGGCCAGATGTG
LOC_Os01g13404
OsAffx.11033.1.S1_at--258--3611Chr01:7461354..7461376 (23 bp)
CATTGGCCAGATGTGGAGTCATGGA
LOC_Os01g13404
OsAffx.11033.1.S1_at--118--8671Chr01:7461343..7461367 (25 bp)
TGTGGAGTCATGGATCTGTGAAGAG
LOC_Os01g13404
OsAffx.11033.1.S1_at--459--9471Chr01:7461329..7461353 (25 bp)
TCTGTGAAGAGGATGAATGACCCAT
LOC_Os01g13404
OsAffx.11033.1.S1_at--747--5351Chr01:7461324..7461348 (25 bp)
GAAGAGGATGAATGACCCATATGTT
LOC_Os01g13404
OsAffx.11033.1.S1_at--528--6171Chr01:7461321..7461345 (25 bp)
GAGGATGAATGACCCATATGTTGGC
LOC_Os01g13404
OsAffx.11033.1.S1_at--112--6331Chr01:7461318..7461342 (25 bp)
GATGAATGACCCATATGTTGGCATG
LOC_Os01g13404
OsAffx.11033.1.S1_at--811--5271Chr01:7461315..7461339 (25 bp)
GAATGACCCATATGTTGGCATGAAA
LOC_Os01g13404
OsAffx.11033.1.S1_at--982--671Chr01:7461313..7461337 (25 bp)
ATGACCCATATGTTGGCATGAAAAT
LOC_Os01g13404
OsAffx.11033.1.S1_at--873--5811Chr01:7461311..7461335 (25 bp)
GACCCATATGTTGGCATGAAAATAT
LOC_Os01g13404
Target Sequence 
GCTGACCTGGGCATTGGCCAGATGTGGAGTCATGGATCTGTGAAGAGGATGAATGACCCATATGTTGGCATGAAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis