Browse Element(s) Details


Os.36648.1.S1_x_at

Description gb:AK062963.1
DB_XREF= gi:32972981
TID=Os.36648.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D08, full insert sequence.
FL= gb:AK062963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1348010/11Glutaredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13480Os.36648.1.S1_x_at10/111+7514014..7515543Glutaredoxin family protein, expressed
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein
LOC_Os01g13500OsAffx.23226.1.S1_x_at4/111+7525451..7526938hypothetical protein
LOC_Os01g13510OsAffx.11035.1.S1_at11/111+7540473..7541312hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36648.1.S1_x_at--564--9671Chr02:18729919..18729943 (25 bp)
TCACACAGTTACACCCTTATCTCTT
NONE
Os.36648.1.S1_x_at--5--1911Chr01:7515230..7515254 (25 bp)
ACGTCGAGCGGTGCGCCAAGTGCAA
LOC_Os01g13480
Os.36648.1.S1_x_at--480--1631Chr01:7515236..7515260 (25 bp)
AGCGGTGCGCCAAGTGCAACGAGAA
LOC_Os01g13480
Os.36648.1.S1_x_at--585--5971Chr01:7515256..7515280 (25 bp)
GAGAACGGCCTCATGCTGTGCCCCA
LOC_Os01g13480
Os.36648.1.S1_x_at--819--9171Chr01:7515274..7515298 (25 bp)
TGCCCCATCTGCCACTGATTGTGCT
LOC_Os01g13480
Os.36648.1.S1_x_at--981--8811Chr01:7515289..7515313 (25 bp)
TGATTGTGCTCCACCGCCGCGAATC
LOC_Os01g13480
Os.36648.1.S1_x_at--403--4591Chr01:7515307..7515331 (25 bp)
GCGAATCCTTCTAGCGTTTAATCCG
LOC_Os01g13480
Os.36648.1.S1_x_at--408--3711Chr01:7515317..7515341 (25 bp)
CTAGCGTTTAATCCGCGCCCATGTA
LOC_Os01g13480
Os.36648.1.S1_x_at--661--4151Chr01:7515332..7515356 (25 bp)
CGCCCATGTATATTTATCCATAATA
LOC_Os01g13480
Os.36648.1.S1_x_at--312--7391Chr01:7515370..7515394 (25 bp)
GTGAGTTTAAACTACACTCTATTAG
LOC_Os01g13480
Os.36648.1.S1_x_at--119--51Chr01:7515411..7515435 (25 bp)
ATTGAAATGGTATATAGTGCTTGTA
LOC_Os01g13480
Target Sequence 
TCACACAGTTACACCCTTATCTCTTCCTCTCCCTCCTCCCTCCTTCCCACCTCCCCACCTCCCTCTGCAACGGTGGGGCG
CGGAGTGCCCGCCGGCGCCACCGCCGCCGCCGCCGACGTCGAGCGGTGCGCCAAGTGCAACGAGAACGGCCTCATGCTGT
GCCCCATCTGCCACTGATTGTGCTCCACCGCCGCGAATCCTTCTAGCGTTTAATCCGCGCCCATGTATATTTATCCATAA
TATACTCGTATAATTGTGAGTTTAAACTACACTCTATTAGTGGTTTATAAATGAGAATTGAAATGGTATATAGTGCTTGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36648.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis