Browse Element(s) Details


OsAffx.16475.1.S1_at

Description tigr:9629.m01267
TID=OsAffx.16475.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2943011/11hypothetical protein
LOC_Os01g129904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29370OsAffx.22325.1.S1_at10/117+17247907..17248424hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_x_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29390OsAffx.10094.1.A1_x_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390Os.20031.1.S1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390OsAffx.10094.1.A1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29400NANA7+17263837..17264325hypothetical protein
LOC_Os07g29410Os.12100.1.S1_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29410Os.52278.1.S1_s_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29420Os.37227.1.S1_at11/117+17269209..17272584RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os07g29430OsAffx.16475.1.S1_at11/117+17273178..17273792hypothetical protein
LOC_Os07g29440NANA7+17274496..17274990S-adenosylmethionine synthetase 1, putative
LOC_Os07g29450Os.11483.1.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29450Os.11483.2.S1_at11/117+17275926..17281914expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16475.1.S1_at--735--4152Chr07:17273267..17273291 (25 bp)
CGCCCGTCGCCATTGGGAGCCTGGA
LOC_Os07g29430
OsAffx.16475.1.S1_at--511--892Chr07:17273291..17273315 (25 bp)
AGGCCTGCTGCCTGGTGCCCTCTGT
LOC_Os07g29430
OsAffx.16475.1.S1_at--1133--7772Chr07:17273304..17273328 (25 bp)
GGTGCCCTCTGTTCGGCGGACCTCG
LOC_Os07g29430
OsAffx.16475.1.S1_at--694--5932Chr07:17273369..17273393 (25 bp)
GAGCAGGCAACATCGGGAGTGGAAG
LOC_Os07g29430
OsAffx.16475.1.S1_at--379--3372Chr07:17273506..17273530 (25 bp)
CACCTGCCTGTCGACGGGATGGTAA
LOC_Os07g29430
OsAffx.16475.1.S1_at--989--4092Chr07:17273517..17273541 (25 bp)
CGACGGGATGGTAAGCTCGAGCTCC
LOC_Os07g29430
OsAffx.16475.1.S1_at--874--7992Chr07:17273522..17273546 (25 bp)
GGATGGTAAGCTCGAGCTCCGCCTC
LOC_Os07g29430
OsAffx.16475.1.S1_at--279--4471Chr07:17273565..17273589 (25 bp)
GCCTCGGCCGAGTTGGAGCCGCACA
LOC_Os07g29430
OsAffx.16475.1.S1_at--248--10872Chr07:17273577..17273601 (25 bp)
TTGGAGCCGCACATGGGCAGGAACT
LOC_Os07g29430
OsAffx.16475.1.S1_at--871--2112Chr07:17273587..17273611 (25 bp)
ACATGGGCAGGAACTCGGCGCCACT
LOC_Os07g29430
OsAffx.16475.1.S1_at--1127--451Chr07:17273659..17273683 (25 bp)
ATCGGCTTCGGGTGCAACCACTTCG
LOC_Os07g29430
Target Sequence 
CGCCCGTCGCCATTGGGAGCCTGGAGGCCTGCTGCCTGGTGCCCTCTGTTCGGCGGACCTCGCTNCTGGGGAAGANGCCA
CCGTGAGNCGATGGTGGGGAGCNGAGCAGGCAACATCGGGAGTGGAAGATGGNTGGCGGGATGGTNAGCTCGNGCTCGCC
GGCTCCCCTCCCCTCTTCCTCACCTCCGTCTTCCTCATCGGCCGCCACCTACCGCGACCCCCTCCTCGGCAACCGCCTCC
CACCTGCCTGTCGACGGGATGGTAAGCTCGAGCTCCGCCTCTGCTCCTGCGGCGCGGGGGCCTCGGCCGAGTTGGAGCCG
CACATGGGCAGGAACTCGGCGCCACTCCCCGCCGACGACGAGGCTGGCGCCCTCCGCTTGGCTCCGCCGCCCCATCGGCT
TCGGGTGCAACCACTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis