Browse Element(s) Details


Os.11483.2.S1_at

Description gb:NM_187278.1
DB_XREF= gi:34901641
GEN=P0640E12.14
TID=Os.11483.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0640E12.14 (P0640E12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0640E12.14 (P0640E12.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2945011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29380OsAffx.31578.1.S1_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_x_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29390OsAffx.10094.1.A1_x_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390Os.20031.1.S1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390OsAffx.10094.1.A1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29400NANA7+17263837..17264325hypothetical protein
LOC_Os07g29410Os.12100.1.S1_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29410Os.52278.1.S1_s_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29420Os.37227.1.S1_at11/117+17269209..17272584RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os07g29430OsAffx.16475.1.S1_at11/117+17273178..17273792hypothetical protein
LOC_Os07g29440NANA7+17274496..17274990S-adenosylmethionine synthetase 1, putative
LOC_Os07g29450Os.11483.1.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29450Os.11483.2.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29460NANA7+17299579..17303314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29470Os.45957.4.S1_x_at6/117+17303576..17304803retrotransposon protein, putative, unclassified
LOC_Os07g29480OsAffx.10091.1.S1_at11/117+17305202..17306560transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11483.2.S1_at--373--211Chr07:17280653..17280677 (25 bp)
ATTTGCTCATGAAAGTTCCATCCAG
LOC_Os07g29450
Os.11483.2.S1_at--568--5571Chr07:17280663..17280825 (25 bp)
GAAAGTTCCATCCAGCACGTTGAAA
LOC_Os07g29450
Os.11483.2.S1_at--581--3531Chr07:17280671..17280833 (25 bp)
CATCCAGCACGTTGAAATACAGCAT
LOC_Os07g29450
Os.11483.2.S1_at--699--6911Chr07:17280930..17280954 (25 bp)
GTATGAGCTGTTACCGTTAACTATT
LOC_Os07g29450
Os.11483.2.S1_at--1050--9951Chr07:17280941..17280965 (25 bp)
TACCGTTAACTATTTGGCCATCACC
LOC_Os07g29450
Os.11483.2.S1_at--109--2031Chr07:17280949..17280973 (25 bp)
ACTATTTGGCCATCACCTGAAGTTA
LOC_Os07g29450
Os.11483.2.S1_at--1139--8431Chr07:17280956..17280980 (25 bp)
GGCCATCACCTGAAGTTATATTTTT
LOC_Os07g29450
Os.11483.2.S1_at--616--2831Chr07:17280968..17280992 (25 bp)
AAGTTATATTTTTGACTTCTGTGGA
LOC_Os07g29450
Os.11483.2.S1_at--661--5691Chr07:17280981..17281005 (25 bp)
GACTTCTGTGGAGCACAGTTCCTTC
LOC_Os07g29450
Os.11483.2.S1_at--276--4291Chr07:17281015..17281039 (25 bp)
CCTCCTGTTACTGCAAGTTTTCACA
LOC_Os07g29450
Os.11483.2.S1_at--808--5171Chr07:17281027..17281051 (25 bp)
GCAAGTTTTCACAGGTATGAGCTGT
LOC_Os07g29450
Target Sequence 
ATTTGCTCATGAAAGTTCCATCCAGCACGTTGAAATACAGCATAAGCATTGTGGCAGACAAGGGATTGAAAAAGTCATTA
TATACTTCTGCGAGGCTGAAAAAAGGCGAAGTCATATACTTGGAAACACATTATAATAGGTATGAGCTGTTACCGTTAAC
TATTTGGCCATCACCTGAAGTTATATTTTTGACTTCTGTGGAGCACAGTTCCTTCATTTCCCCCCCTCCTGTTACTGCAA
GTTTTCACAGGTATGAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11483.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis