Browse Element(s) Details


OsAffx.22082.1.S1_x_at

Description tigr:9629.m01262
TID=OsAffx.22082.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1293010/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22082.1.S1_x_at--193--8331Chr01:7175408..7175507 (25 bp)
GGCTCCGGCGTCAAGGTGCTAAGCT
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--742--4391Chr01:7175366..7175390 (25 bp)
GCCAAGGTCCTGAACGCGAGCAAGG
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--651--9031Chr01:7175320..7175344 (25 bp)
TGCACGGGAAGCTCTTCTGCGGCTG
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--326--1891Chr01:7175255..7175279 (25 bp)
ACGATCGGCGTGATCCAGCAAGGGA
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--1035--4791NONE
GCTCGACGGCGCATCAGTCAAGATA
NONE
OsAffx.22082.1.S1_x_at--61--10111Chr01:7174533..7174557 (25 bp)
TATGGAGCAGCTCGAACTACAGCCT
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--785--2531Chr01:7174519..7174543 (25 bp)
AACTACAGCCTGGTCGGGACGATAC
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--80--8611Chr01:7174467..7174491 (25 bp)
TGGTGAGCTCGGACCTGGTGTACCT
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--907--8751Chr01:7174449..7174473 (25 bp)
TGTACCTCGGCTCCAGGAATGGCGT
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--571--5971Chr01:7174405..7174429 (25 bp)
GAGAAGCTGACCAGGATCGGCGCTC
LOC_Os01g12930
OsAffx.22082.1.S1_x_at--892--751Chr01:7174317..7174341 (25 bp)
ATGTCATCGTCGTCGGGACATCGGA
LOC_Os01g12930
Target Sequence 
GGCTCCGGCGTCAAGGTGCTAAGCTGGAACAATGGTGGCGGCGCCAAGGTCCTGAACGCGAGCAAGGTGGTGAGATCCAT
GGCGCTGGTGCACGGGAAGCTCTTCTGCGGCTGCAACGACGGCGGCGTGCAGGAGATCGACCTGGCGAGCGGGACGATCG
GCGTGATCCAGCAAGGGAGCAAGAGGATCATCGGCAAGGCCAGCCCGATCTACTCTCTGCATCTTCACGGCGACCTCCTC
TACACCGGCAGCACCTCGCTCGACGGCGCATCAGTCAAGATATGGAGCAGCTCGAACTACAGCCTGGTCGGGACGATACC
GTCGTCGGTGGAGGTGAGGTCGCTGGTGGTGAGCTCGGACCTGGTGTACCTCGGCTCCAGGAATGGCGTCGTGGAGATCT
GGTCGAGGGAGAAGCTGACCAGGATCGGCGCTCTCCAGGCCGGCGGCGGCGGCGGCAGCGGCCGGGTCCAGTGCATGGCC
GTCGACGCCGACGGCGATGTCATCGTCGTCGGGACATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22082.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis