Browse Element(s) Details


Os.12209.1.S1_a_at

Description gb:AB029508.1
DB_XREF= gi:5902925
GEN=OsRac1
TID=Os.12209.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12209 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for small GTP-binding protein OsRac1, complete cds.
PROD=small GTP-binding protein OsRac1
FL= gb:AB029508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1290011/11RAC-like GTP binding protein ARAC7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000902biological_processcellular morphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12209.1.S1_a_at--381--7871Chr01:7162759..7162783 (25 bp)
GGTTTGCGCCTGGTGTTCCTGTAGT
LOC_Os01g12900
Os.12209.1.S1_a_at--688--10631Chr01:7162744..7162768 (25 bp)
TTCCTGTAGTTCTTGTTGGAACCAA
LOC_Os01g12900
Os.12209.1.S1_a_at--1061--9831Chr01:7162027..7162051 (25 bp)
TAAAGCTGTTTTCGACACTGCCATC
LOC_Os01g12900
Os.12209.1.S1_a_at--111--4411Chr01:7162008..7162032 (25 bp)
GCCATCAAAGTGGTGCTTCAACCTC
LOC_Os01g12900
Os.12209.1.S1_a_at--206--5551Chr01:7161958..7161982 (25 bp)
GAAACTCCAATCAAGCTCCAATCGG
LOC_Os01g12900
Os.12209.1.S1_a_at--1069--4431Chr01:7161814..7161966 (25 bp)
TCCAATCGGCCAGTAAGGCGGTACT
LOC_Os01g12900
Os.12209.1.S1_a_at--174--911Chr01:7161799..7161823 (25 bp)
AGGCGGTACTTTTGCGGAAGCGCTT
LOC_Os01g12900
Os.12209.1.S1_a_at--542--2671Chr01:7161782..7161806 (25 bp)
AAGCGCTTGTTTCGCGTAGTCAATA
LOC_Os01g12900
Os.12209.1.S1_a_at--177--6671Chr01:7161668..7161692 (25 bp)
GTTGAATCAACATTGCTTGCAGCTA
LOC_Os01g12900
Os.12209.1.S1_a_at--796--7511Chr01:7161612..7161636 (25 bp)
GTGGAGCTCCTTTTGTTTCTCCTTT
LOC_Os01g12900
Os.12209.1.S1_a_at--660--9771Chr01:7161537..7161561 (25 bp)
TAAGATGTGCTCTTCTGGATGGCTA
LOC_Os01g12900
Target Sequence 
GGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTGGAACCAAGTTGGATCTCCGTGAAGATAGGGCCTATCTTGCTGATCAT
CCAGCTTCTTCCATAATAACAACGGAGCAGGGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAG
CTCCAAGACACAGAGAAACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCAACCTCCAAGACATAAGGATG
TAACCAGAAAGAAACTCCAATCAAGCTCCAATCGGCCAGTAAGGCGGTACTTTTGCGGAAGCGCTTGTTTCGCGTAGTCA
ATAACCAAGAAGNAAAAAATGTGGTTTTTGTTCCATCACCATGATNNTCAGATGGCCCCATGGNTCTACTCAGAATGGGA
TAGAAGATCATGGTTGAATCAACATTGCTTGCAGCTAGGAGGAAACTTCTAGTTCTCTTTTNTNCTGCAGTGGAGCTCCT
TTTGTTTCTCCTTTCTCTTTTTTTTCTTATGTNGTAAAAGCTCCAGAAAGTTTTACCCTTGGTAATAAGATGTGCTCTTC
TGGATGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12209.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis