Browse Element(s) Details


Os.3561.1.S1_at

Description gb:AK108111.1
DB_XREF= gi:32993320
TID=Os.3561.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B12, full insert sequence.
FL= gb:AK108111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1291011/11thioesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3561.1.S1_at--42--9431Chr01:7170902..7170926 (25 bp)
TCGGTGGAGGGCATCATCAAGGTCT
LOC_Os01g12910
Os.3561.1.S1_at--476--2891Chr01:7170920..7170944 (25 bp)
AAGGTCTCCGTCCACTACGACATCT
LOC_Os01g12910
Os.3561.1.S1_at--702--491Chr01:7172326..7172350 (25 bp)
ATCGGCCGGCAGTGGATGTCGACCA
LOC_Os01g12910
Os.3561.1.S1_at--142--1011Chr01:7172363..7172387 (25 bp)
AGGATCAAGCTAGCAGCAAGCTGTG
LOC_Os01g12910
Os.3561.1.S1_at--338--5171Chr01:7172378..7172402 (25 bp)
GCAAGCTGTGACTCTGAACCAGGTA
LOC_Os01g12910
Os.3561.1.S1_at--437--8991Chr01:7172392..7172416 (25 bp)
TGAACCAGGTATGCCTACCTAGCTC
LOC_Os01g12910
Os.3561.1.S1_at--36--1751Chr01:7172408..7172432 (25 bp)
ACCTAGCTCCCAATGGAGTTCTTCA
LOC_Os01g12910
Os.3561.1.S1_at--614--3551Chr01:7172436..7172460 (25 bp)
CATCTATTGCTCACCTTAGCAACCA
LOC_Os01g12910
Os.3561.1.S1_at--249--5151Chr01:7172454..7172478 (25 bp)
GCAACCATCGAGGTGATTGTAACTT
LOC_Os01g12910
Os.3561.1.S1_at--110--6611Chr01:7172468..7172492 (25 bp)
GATTGTAACTTTTGTGTGTTGCAAG
LOC_Os01g12910
Os.3561.1.S1_at--617--7411Chr01:7172483..7172507 (25 bp)
GTGTTGCAAGAAAAATCTCTCTCAT
LOC_Os01g12910
Target Sequence 
TCGGTGGAGGGCATCATCAAGGTCTCCGTCCACTACGACATCTCCTACTTCTCGCCGGCCNNNCTNCANGAGGAAGTTGA
GCTGGACGGCAGGGTGGTGGAGCAGAAAGGGAAGATGACGGCGGTGACGGTGGAGATCCGGAAGAAGGATTCCGGCGAGC
TGGTGGCGATCGGCCGGCAGTGGATGTCGACCANCCAGGCCAAAGAAGGATCAAGCTAGCAGCAAGCTGTGACTCTGAAC
CAGGTATGCCTACCTAGCTCCCAATGGAGTTCTTCAGNTCATCTATTGCTCACCTTAGCAACCATCGAGGTGATTGTAAC
TTTTGTGTGTTGCAAGAAAAATCTCTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis