Browse Element(s) Details


OsAffx.23221.1.S1_s_at

Description gb:NM_188605.1
DB_XREF= gi:34904293
TID=OsAffx.23221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1294011/11Phosphorylase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12970NANA1+7206712..7208847retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g12980NANA1+7209074..7210053retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0003824molecular_functioncatalytic activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23221.1.S1_s_at--860--1531Chr01:7183313..7183337 (25 bp)
AGCATCTGGTTCCAGCCCGAGGAGA
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--313--1511Chr01:7183264..7183288 (25 bp)
AGCAGCGCCAACACGCCTTCTGGGT
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--618--10591Chr01:7183220..7183244 (25 bp)
TTCTCCCTCGCTGAGAAGCTAGAGG
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--613--5891Chr01:7182632..7182656 (25 bp)
GAGCTGCCGGCGTGCGTGAACGCGA
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--909--7771Chr01:7182562..7182586 (25 bp)
GGTGCAGCGCCAACGTGTTCCTCGA
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--320--9971Chr01:7182527..7182551 (25 bp)
TACCGTCAGTTCCTGCGGGCCAAGT
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--35--10671Chr01:7182518..7182542 (25 bp)
TTCCTGCGGGCCAAGTTCGGGTGCA
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--891--3211Chr01:7182507..7182531 (25 bp)
CAAGTTCGGGTGCACGCCGGTGGAG
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--504--7511Chr01:7182488..7182512 (25 bp)
GTGGAGATGGAGAGCGCCGCCGTGG
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--2--1451Chr01:7182346..7182370 (25 bp)
AGAACGCCGTCGACGTCATGCTCAA
LOC_Os01g12940
OsAffx.23221.1.S1_s_at--890--7211Chr01:7182338..7182362 (25 bp)
GTCGACGTCATGCTCAACTTCGTCC
LOC_Os01g12940
Target Sequence 
AGCATCTGGTTCCAGCCCGAGGAGATCTTCCCCGTCTCCGGCAAGCCGGAGCAGCGCCAACACGCCTTCTGGGTCCCCGT
CAGCTCCCGCTACTTCTCCCTCGCTGAGAAGCTAGAGGGGATGGAGCTGCCGGCGTGCGTGAACGCGACGACGTGCCTGC
CGCGGGCGCCGAGGGTGACGAGGGTGAGGAGGGGGTGCAGCGCCAACGTGTTCCTCGACAACGCCGCCTACCGTCAGTTC
CTGCGGGCCAAGTTCGGGTGCACGCCGGTGGAGATGGAGAGCGCCGCCGTGGCGCTCGTGGCGCACCAGCACGCCGTCCC
GTTCCTCACCATCCGCTCCCTCTCCGACCTCGCTGGCGGCGGCTCCTCGCTCGGCAACGAGGCCGGCGAGTTCCTCGCCA
TCGCCGCCCAGAACGCCGTCGACGTCATGCTCAACTTCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23221.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis