Browse Element(s) Details


Os.1406.1.S1_at

Description gb:AK060687.1
DB_XREF= gi:32970705
TID=Os.1406.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H05, full insert sequence.
FL= gb:AK105932.1 gb:AK060687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1085011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1406.1.S1_at--728--6251Chr01:5787373..5787397 (25 bp)
GATGGTGAGGCTGGGCAACCTGAGC
LOC_Os01g10850
Os.1406.1.S1_at--503--5451Chr01:5787412..5787436 (25 bp)
GAACGGCGAGGTACGGATCAACTGC
LOC_Os01g10850
Os.1406.1.S1_at--973--10771Chr01:5787473..5787497 (25 bp)
TTGATGTACGCTTCGTGAACGCCAT
LOC_Os01g10850
Os.1406.1.S1_at--915--6971Chr01:5787478..5787502 (25 bp)
GTACGCTTCGTGAACGCCATAAACT
LOC_Os01g10850
Os.1406.1.S1_at--80--3651Chr01:5787483..5787507 (25 bp)
CTTCGTGAACGCCATAAACTTATTA
LOC_Os01g10850
Os.1406.1.S1_at--200--9571Chr01:5787513..5787537 (25 bp)
TCTTGTTTTTACCAAAAGCAAATGG
LOC_Os01g10850
Os.1406.1.S1_at--769--171Chr01:5787560..5787584 (25 bp)
ATTTTTCTCCAAATTTCGATCGAAG
LOC_Os01g10850
Os.1406.1.S1_at--887--191Chr01:5787572..5787596 (25 bp)
ATTTCGATCGAAGCGAGCAGCACAC
LOC_Os01g10850
Os.1406.1.S1_at--346--6391Chr01:5787577..5787601 (25 bp)
GATCGAAGCGAGCAGCACACACAAA
LOC_Os01g10850
Os.1406.1.S1_at--969--1491Chr01:5787590..5787614 (25 bp)
AGCACACACAAAACTCTGCCATGAA
LOC_Os01g10850
Os.1406.1.S1_at--181--3271Chr01:5787598..5787622 (25 bp)
CAAAACTCTGCCATGAACCGATTCA
LOC_Os01g10850
Target Sequence 
GATGGTGAGGCTGGGCAACCTGAGCCCGCTCACCGGGAAGAACGGCGAGGTACGGATCAACTGCCGGCGAGTGAACTCAT
CATGAACATGAAATGGATTCTTGATGTACGCTTCGTGAACGCCATAAACTTATTATCAAATCTTGTTTTTACCAAAAGCA
AATGGAAAAAATGCTGNTCTTGCACTGATTTTTCTCCAAATTTCGATCGAAGCGAGCAGCACACACAAAACTCTGCCATG
AACCGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis