Browse Element(s) Details


Os.1411.1.S1_at

Description gb:AK065589.1
DB_XREF= gi:32975607
TID=Os.1411.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.1411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031K24, full insert sequence.
FL= gb:AK065589.1 gb:AK071552.1 gb:AK069681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1089011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1411.1.S1_at--869--8251Chr01:5806942..5806966 (25 bp)
GGCAGACTCACGGTTCATGACACAA
LOC_Os01g10890
Os.1411.1.S1_at--275--2171Chr01:5806767..5806791 (25 bp)
ACACCATCCTTCTTTGTTGTTGAGG
LOC_Os01g10890
Os.1411.1.S1_at--1080--1351Chr01:5806648..5806672 (25 bp)
AGAGCATCCATCACTGGCACAGTCA
LOC_Os01g10890
Os.1411.1.S1_at--478--2011Chr01:5806614..5806638 (25 bp)
ACTCAGTCCTCTAAGTCAATCTCGA
LOC_Os01g10890
Os.1411.1.S1_at--932--7071Chr01:5806600..5806624 (25 bp)
GTCAATCTCGAGACATGCCATTTAA
LOC_Os01g10890
Os.1411.1.S1_at--510--9051Chr01:5806557..5806581 (25 bp)
TGCAGTAACAATCCATTTTCCTCTC
LOC_Os01g10890
Os.1411.1.S1_at--1149--9211Chr01:5806532..5806556 (25 bp)
TCCTTTTCCCTTTCATCAAAGTGCT
LOC_Os01g10890
Os.1411.1.S1_at--18--1551Chr01:5806484..5806508 (25 bp)
AGCATCAGGCTTAGGGCTCTTTGAT
LOC_Os01g10890
Os.1411.1.S1_at--337--4411Chr01:5806449..5806473 (25 bp)
GCCAGTTTTCCTTGTATAGTAGCAG
LOC_Os01g10890
Os.1411.1.S1_at--123--1211Chr01:5806426..5806450 (25 bp)
AGTTTGTCTACATGGATCTCCTGTT
LOC_Os01g10890
Os.1411.1.S1_at--825--6411Chr01:5806412..5806436 (25 bp)
GATCTCCTGTTCTTTCACCAATAGA
LOC_Os01g10890
Target Sequence 
GGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCT
TCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCA
GAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATT
CTGCAACAAGGGCCTAAGACCTTCTCTCNAGGGACATCTGCTGGGATGGTCAGTCAGAGCATCCATCACTGGCACAGTCA
TCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCC
ATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTT
TGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis