Browse Element(s) Details


OsAffx.9832.1.S1_x_at

Description tigr:9636.m02746
TID=OsAffx.9832.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2778011/11Protein kinase domain containing protein, expressed
LOC_Os01g108701/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9832.1.S1_x_at--884--4571Chr08:16786743..16786767 (25 bp)
GCGCTGGCGTACATGCACTCGTCGG
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--289--8312Chr01:5796602..5796905 (25 bp)
GGCTCACGGCCAAGGTGTCCGACTT
LOC_Os01g10870
OsAffx.9832.1.S1_x_at--734--5811Chr08:16786560..16786584 (25 bp)
GACCCGGAGTACCTGCTGACGTGCC
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--1061--1171Chr08:16786553..16786577 (25 bp)
AGTACCTGCTGACGTGCCAGCTCAC
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--801--7651Chr08:16786476..16786500 (25 bp)
GGGAGGAAGGCCTTCTGCCCGCCGC
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--916--5771Chr08:16786410..16786434 (25 bp)
GACGACCGGAGCCTCGCGTTCTTCT
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--474--9691Chr08:16786382..16786406 (25 bp)
TCACTGCGGCGCACAAGGGACGGCA
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--147--2211Chr08:16786370..16786394 (25 bp)
ACAAGGGACGGCACCGGGAGATCAT
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--979--1611Chr08:16786292..16786316 (25 bp)
AGCTGGTGATGCAGTGCCTGAGCAT
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--527--1131Chr08:16786280..16786304 (25 bp)
AGTGCCTGAGCATGGCCGGAGAGGA
LOC_Os08g27780
OsAffx.9832.1.S1_x_at--165--1731Chr08:16786248..16786272 (25 bp)
ACCATGAAGGAGGTCGCCGACAGGC
LOC_Os08g27780
Target Sequence 
GCGCTGGCGTACATGCACTCGTCGGCCTCGCCCCCGATCCTCCACGGCGACGTCAAGTCCGCCAACATCCTGCTCGACGC
CGGGCTCACGGCCAAGGTGTCCGACTTCGGCGCGTCGAGGCTCGCGCCGGCGGCCGACGAGGCCGAGGTGGCGACGCTGG
TGCAGGGGACTTGCGGGTACCTCGACCCGGAGTACCTGCTGACGTGCCAGCTCACCAGCAAGAGCGACGTGTACAGCTTC
GCGGTGGTGCTCCTCGAGCTGCTCACGGGGAGGAAGGCCTTCTGCCCGCCGCCGGACAGCGCCGCCGGCTCGCAGGACGA
CGACGACGACGACGACGACCGGAGCCTCGCGTTCTTCTTCCTCACTGCGGCGCACAAGGGACGGCACCGGGAGATCATGG
ACGGGTGGGTCAGGGAGGAGGTCGGAGGCGAGGTGCTCGACAACGCCGCGGAGCTGGTGATGCAGTGCCTGAGCATGGCC
GGAGAGGAGAGGCCGACCATGAAGGAGGTCGCCGACAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9832.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis