Browse Element(s) Details


OsAffx.22021.1.S1_at

Description gb:NM_188877.1
DB_XREF= gi:34904837
GEN=OJ1484_G09.12
TID=OsAffx.22021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.12 (OJ1484_G09.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2773011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27700OsAffx.17195.1.S1_at11/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_at9/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_x_at8/118+16740754..16743564expressed protein
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22021.1.S1_at--343--1051Chr08:16769121..16769145 (25 bp)
AGGTGTCAACCAATCCTACATTACC
LOC_Os08g27730
OsAffx.22021.1.S1_at--924--5051Chr08:16769164..16769188 (25 bp)
GCAGCAGCTCACATCAAAGACTTCA
LOC_Os08g27730
OsAffx.22021.1.S1_at--741--2331Chr08:16769179..16769203 (25 bp)
AAAGACTTCAGACCTATATCCCTAC
LOC_Os08g27730
OsAffx.22021.1.S1_at--415--2331Chr08:16769265..16769289 (25 bp)
AAAGTTGATCGACCCTATGCAGTCA
LOC_Os08g27730
OsAffx.22021.1.S1_at--857--10131Chr08:16769280..16769304 (25 bp)
TATGCAGTCAGGCTTCATCCGTGGC
LOC_Os08g27730
OsAffx.22021.1.S1_at--163--8471Chr08:16769301..16769325 (25 bp)
TGGCCGGTCGATCACAGAGAACTTC
LOC_Os08g27730
OsAffx.22021.1.S1_at--827--1352Chr08:16769316..16769340 (25 bp)
AGAGAACTTCATTCTCGCCTCAGAA
LOC_Os08g27730
OsAffx.22021.1.S1_at--729--2211Chr08:16769399..16769423 (25 bp)
ACAAGGCCTTTGATACCGTCAGTTG
LOC_Os08g27730
OsAffx.22021.1.S1_at--782--7631Chr08:16769423..16769447 (25 bp)
GGGACGCACTGTTCCGAATCATGGA
LOC_Os08g27730
OsAffx.22021.1.S1_at--117--3771Chr08:16769579..16769603 (25 bp)
CTCTATCACCCTATCTATTCATTTT
LOC_Os08g27730
OsAffx.22021.1.S1_at--956--2331Chr08:16769658..16769682 (25 bp)
AAAGCACCCACTTGACATTGAAGGA
LOC_Os08g27730
Target Sequence 
AGGTGTCAACCAATCCTACATTACCCTGATTCCAAAGGTCACAGCAGCAGCTCACATCAAAGACTTCAGACCTATATCCC
TACTGCACAGTGTCCCAAAACTGCTCAGCAAAACCTTAACCAACAGGCTGCAAAAGGAAATATTAAAGTTGATCGACCCT
ATGCAGTCAGGCTTCATCCGTGGCCGGTCGATCACAGAGAACTTCATTCTCGCCTCAGAACTGGTACAGTCAGCTTTGAA
GGGCAAGAAACCAATGATAGTCCTCAAGCTAGATTTTCACAAGGCCTTTGATACCGTCAGTTGGGACGCACTGTTCCGAA
TCATGGAAGCAAGAGGTTTCCCGGACAAAAGGATTGGTTGGATCAAAGCACTATTATGCACAGGCAAAGCTCAGATCACC
AACAATGGACAAAAGGGAGAACAGATACAGTACAAAAGAGGGGTACGGCAAGGAGACCCTCTATCACCCTATCTATTCAT
TTTAGTAGCTGATGTGCTCCAAAAAATGATTCAGCAAGCATTCAGCACAGGAATCCTAAAGCACCCACTTGACATTGAAG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis