Browse Element(s) Details


OsAffx.29383.1.S1_x_at

Description gb:NM_188873.1
DB_XREF= gi:34904829
TID=OsAffx.29383.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.8 (OJ1484_G09.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g273301/11hypothetical protein
LOC_Os08g277101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27300OsAffx.26181.1.S1_x_at11/114+15942616..15943164hypothetical protein
LOC_Os04g27310OsAffx.29313.1.S1_at1/114+15946788..15948698transposon protein, putative, Mutator sub-class
LOC_Os04g27320NANA4+15957201..15960996GRF zinc finger family protein
LOC_Os04g27330OsAffx.29383.1.S1_x_at1/114+15962539..15963018hypothetical protein
LOC_Os04g27340Os.52600.1.S1_at10/114+15964240..15975429Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27340Os.27794.1.S1_at3/114+15964240..15975429Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27350NANA4+15979319..15980591retrotransposon protein, putative, LINE subclass
LOC_Os04g27360NANA4+15981058..15981846retrotransposon protein, putative, unclassified
LOC_Os04g27370OsAffx.26182.1.S1_at11/114+15985998..15986219hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29383.1.S1_x_at--531--10331Chr08:16750939..16750963 (25 bp)
TTTACTCACCTCACACGGGTTCAAA
NONE
OsAffx.29383.1.S1_x_at--1097--10431Chr08:16750938..16750962 (25 bp)
TTACTCACCTCACACGGGTTCAAAC
NONE
OsAffx.29383.1.S1_x_at--905--10455Chr11:25823713..25823734 (22 bp)
TTCAAACCCTAAACCGTTTGAGCAG
NONE
OsAffx.29383.1.S1_x_at--649--1792Chr11:25823530..25823729 (25 bp)
ACCCTAAACCGTTTGAGCAGCGGCG
NONE
OsAffx.29383.1.S1_x_at--858--3632Chr11:25823527..25823726 (25 bp)
CTAAACCGTTTGAGCAGCGGCGCCG
NONE
OsAffx.29383.1.S1_x_at--783--9831Chr11:25823526..25823725 (25 bp)
TAAACCGTTTGAGCAGCGGCGCCGG
NONE
OsAffx.29383.1.S1_x_at--92--5755Chr11:25018268..25018317 (25 bp)
GACGGCGTGGAGATCTGGAGGCCCG
NONE
OsAffx.29383.1.S1_x_at--408--8351Chr08:16750468..16750492 (25 bp)
GGCGGCAGCAGATCTGGCCGTCTCC
NONE
OsAffx.29383.1.S1_x_at--197--10031Chr08:16750417..16750441 (25 bp)
TAGACGGGTGGGAGCGAGCGGCCAT
NONE
OsAffx.29383.1.S1_x_at--1024--4334Chr11:25018077..25018101 (25 bp)
CCATGGCGGCGGTAGCTGCGACAAC
NONE
OsAffx.29383.1.S1_x_at--378--8474Chr11:25018074..25018098 (25 bp)
TGGCGGCGGTAGCTGCGACAACGAC
NONE
Target Sequence 
TTTACTCACCTCACACGGGTTCAAACCCTAAACCGTTTGAGCAGCGGCGCCGGCGCCGGCCTGGCAGGGGCGAGAGGGGA
GGCGCGGGAAAGGAGGCGTGGTGGCGGCGGACGGCGTGGAGATCTGGAGGCCCGACTGAGGGAGGGGAGGCGGTGGTGGC
CCGACGGCGGCAGGGGTCACGCCCTCCCCTCCGCTAGATCCGGCGGGAGGGGAGGCGACGGCGGCTCGGCGGCAGCAGAT
CTGGCCGTCTCCGCCCTCGGGAGCGGCGGCGGCGGGCTTAGACGGGTGGGAGCGAGCGGCCATGGCGGCGGTAGCTGCGA
CAACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29383.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis