Browse Element(s) Details


OsAffx.26181.1.S1_x_at

Description tigr:9632.m02571
TID=OsAffx.26181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27260Os.53142.1.S1_at3/114+15917347..15920417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27260Os.23706.1.A1_x_at1/114+15917347..15920417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27270NANA4+15925878..15929464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27280NANA4+15931595..15932502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27290Os.23964.1.S1_at1/114+15933098..15934332retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27300OsAffx.26181.1.S1_x_at11/114+15942616..15943164hypothetical protein
LOC_Os04g27310OsAffx.29313.1.S1_at1/114+15946788..15948698transposon protein, putative, Mutator sub-class
LOC_Os04g27320NANA4+15957201..15960996GRF zinc finger family protein
LOC_Os04g27330OsAffx.29383.1.S1_x_at1/114+15962539..15963018hypothetical protein
LOC_Os04g27340Os.52600.1.S1_at10/114+15964240..15975429Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27340Os.27794.1.S1_at3/114+15964240..15975429Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26181.1.S1_x_at--83--8871Chr04:15942653..15942677 (25 bp)
TGATGGCGACGAGGAAGGGCTGCAC
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--768--4571Chr04:15942691..15942715 (25 bp)
GCGCTGGCGTGGGTGCATCATCAGG
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--982--391Chr04:15942710..15942734 (25 bp)
ATCAGGGGAGCGACGTCTGCCCGAT
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--324--2031Chr04:15942747..15942771 (25 bp)
CACCACCAAGGGTGGCCAACTTCGA
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--270--7711Chr04:15942757..15942781 (25 bp)
GGTGGCCAACTTCGACCAGAACGTG
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--1116--5651Chr04:15943052..15943073 (22 bp)
GACAGGTTTGCTATGGTCCAACAGA
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--548--811Chr04:15943061..15943085 (25 bp)
ATGGTCCAACAGATAGTACCTCAAG
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--788--7271Chr04:15943064..15943088 (25 bp)
GTCCAACAGATAGTACCTCAAGGTA
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--772--9971Chr04:15943077..15943101 (25 bp)
TACCTCAAGGTACCAGATGAAATCG
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--226--4291Chr04:15943079..15943103 (25 bp)
CCTCAAGGTACCAGATGAAATCGAA
LOC_Os04g27300
OsAffx.26181.1.S1_x_at--245--5591Chr04:15943095..15943119 (25 bp)
GAAATCGAACAGTCGAATTGATGGG
LOC_Os04g27300
Target Sequence 
TGATGGCGACGAGGAAGGGCTGCACGGCGTCGCAGCTGGCGCTGGCGTGGGTGCATCATCAGGGGAGCGACGTCTGCCCG
ATCCCGGGCACCAGCACCACCAAGGGTGGCCAACTTCGACCAGAACGTGGCGGCGCTGGGCGTGCGCCTCGCGGCGGAGG
AGATGGCCGAGCTCGAGTCGTTGGCGGCGGCGGACGTGCTGCGCGGGGACAGGTTTGCTATGGTCCAACAGATAGTACCT
CAAGGTACCAGATGAAATCGAACAGTCGAATTGATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26181.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis