Browse Element(s) Details


Os.23964.1.S1_at

Description gb:AK120375.1
DB_XREF= gi:37989998
TID=Os.23964.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-123-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071H14, full insert sequence.
FL= gb:AK120375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g272901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27240OsAffx.20490.1.S1_at2/114+15909122..15909887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g27250Os.27133.2.S1_at11/114+15912201..15914751expressed protein
LOC_Os04g27250OsAffx.14635.1.S1_x_at4/114+15912201..15914751expressed protein
LOC_Os04g27260Os.53142.1.S1_at3/114+15917347..15920417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27260Os.23706.1.A1_x_at1/114+15917347..15920417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27270NANA4+15925878..15929464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27280NANA4+15931595..15932502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27290Os.23964.1.S1_at1/114+15933098..15934332retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27300OsAffx.26181.1.S1_x_at11/114+15942616..15943164hypothetical protein
LOC_Os04g27310OsAffx.29313.1.S1_at1/114+15946788..15948698transposon protein, putative, Mutator sub-class
LOC_Os04g27320NANA4+15957201..15960996GRF zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23964.1.S1_at--846--5212Chr07:29027172..29027196 (25 bp)
GAATTTGACAAGGTGCAAACCCATA
NONE
Os.23964.1.S1_at--598--6671Chr07:29027222..29027246 (25 bp)
GTTGCATATATTTCTGACATTCTCA
NONE
Os.23964.1.S1_at--396--7471Chr07:29027256..29027280 (25 bp)
GTGTGCATCAGGATTTGCTAGCAGC
NONE
Os.23964.1.S1_at--600--3011Chr07:29027298..29027322 (25 bp)
AATGCACACTGCTATTTGACAAGGT
NONE
Os.23964.1.S1_at--371--9252Chr07:29027380..29027404 (25 bp)
TCCTACATCATCCAGTTTGATCAAA
NONE
Os.23964.1.S1_at--794--1171Chr07:29027442..29027466 (25 bp)
AGTACTAGAGATTATGTTGCCATGA
NONE
Os.23964.1.S1_at--1010--6011Chr07:29027465..29027489 (25 bp)
GAGAGATACATTCCTGTTGTTACAG
NONE
Os.23964.1.S1_at--462--7151Chr07:29027526..29027550 (25 bp)
GTCTCACATGTTGGCAATAGGGTCA
NONE
Os.23964.1.S1_at--482--8051Chr07:29027552..29027576 (25 bp)
GGAGATACTAATTTGCTGCTTGCTG
NONE
Os.23964.1.S1_at--271--4771Chr07:29027566..29027590 (25 bp)
GCTGCTTGCTGATTGCTAAGGCGAT
NONE
Os.23964.1.S1_at--148--911Chr07:29027584..29027608 (25 bp)
AGGCGATGGCATTGTTCTATAATAA
NONE
Target Sequence 
GAATTTGACAAGGTGCAAACCCATAATTATTTGCTTGTTTAGTAAATCAAGTTGCATATATTTCTGACATTCTCAAGAAA
TGGAGTGTGCATCAGGATTTGCTAGCAGCAACAATAAGATACTTTTAATGCACACTGCTATTTGACAAGGTGAAAGCCCA
TAAGGATCAAATCCAATTTTATTTTCCTTGTGATGTTTATGAAAGAAATCCTACATCATCCAGTTTGATCAAATGGTTAA
TAGATTTAATCTTTGTATGTTCTATTTGTTAGTACTAGAGATTATGTTGCCATGAGAGATACATTCCTGTTGTTACAGTA
ATGAGGTGTTTTTAGTTCACAAATCTAACTAGGGGTCTCACATGTTGGCAATAGGGTCATGGAGATACTAATTTGCTGCT
TGCTGATTGCTAAGGCGATGGCATTGTTCTATAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis