Browse Element(s) Details


Os.27133.2.S1_at

Description gb:AK065155.1
DB_XREF= gi:32975173
TID=Os.27133.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B19, full insert sequence.
FL= gb:AK065155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2725011/11expressed protein
LOC_Os05g112605/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27210NANA4+15893468..15896923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g27220NANA4+15897965..15901159transposon protein, putative, unclassified
LOC_Os04g27230NANA4+15901799..15907954retrotransposon protein, putative, unclassified
LOC_Os04g27240OsAffx.20490.1.S1_at2/114+15909122..15909887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g27250Os.27133.2.S1_at11/114+15912201..15914751expressed protein
LOC_Os04g27250OsAffx.14635.1.S1_x_at4/114+15912201..15914751expressed protein
LOC_Os04g27260Os.53142.1.S1_at3/114+15917347..15920417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27260Os.23706.1.A1_x_at1/114+15917347..15920417retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27270NANA4+15925878..15929464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27280NANA4+15931595..15932502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g27290Os.23964.1.S1_at1/114+15933098..15934332retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27133.2.S1_at--452--4413Chr05:8753975..8753999 (25 bp)
GCCAGCAATTTTTGTACGGTGCTAT
NONE
Os.27133.2.S1_at--1063--5193Chr05:8753979..8754003 (25 bp)
GCAATTTTTGTACGGTGCTATTTCT
NONE
Os.27133.2.S1_at--968--153Chr05:8753982..8754006 (25 bp)
ATTTTTGTACGGTGCTATTTCTCAA
NONE
Os.27133.2.S1_at--635--8753Chr05:8753987..8754314 (25 bp)
TGTACGGTGCTATTTCTCAAATTCT
NONE
Os.27133.2.S1_at--392--3751Chr04:15914658..15914682 (25 bp)
CTCAAATTCTTTAGATGTGATCTTC
LOC_Os04g27250
Os.27133.2.S1_at--343--10451Chr04:15914668..15914692 (25 bp)
TTAGATGTGATCTTCTTTCTTCCAA
LOC_Os04g27250
Os.27133.2.S1_at--341--6271Chr04:15914671..15914695 (25 bp)
GATGTGATCTTCTTTCTTCCAATAC
LOC_Os04g27250
Os.27133.2.S1_at--100--791Chr04:15914672..15914696 (25 bp)
ATGTGATCTTCTTTCTTCCAATACT
LOC_Os04g27250
Os.27133.2.S1_at--139--10331Chr04:15914683..15914707 (25 bp)
TTTCTTCCAATACTGTATCAATGGT
LOC_Os04g27250
Os.27133.2.S1_at--199--4391Chr04:15914689..15914713 (25 bp)
CCAATACTGTATCAATGGTTGTTTT
LOC_Os04g27250
Os.27133.2.S1_at--198--10372Chr04:15914713..15914737 (25 bp)
TTTTTTCTGTTACAGGTTGACAAGA
LOC_Os04g27250
Target Sequence 
GCCAGCAATTTTTGTACGGTGCTATTTCTCAAATTCTTTAGATGTGATCTTCTTTCTTCCAATACTGTATCAATGGTTGT
TTTTTTTTCTGTTACAGGTTGACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27133.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis